miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 19560 1.1 0.007004
Target:  5'- aUGACGUUCACCCUCCCAACCGCAAUCu -3'
miRNA:   3'- -ACUGCAAGUGGGAGGGUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 113173 0.78 0.553653
Target:  5'- gUGACGgg-GCCCUCCCAGgCgGCGAUCu -3'
miRNA:   3'- -ACUGCaagUGGGAGGGUU-GgCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 140757 0.74 0.734228
Target:  5'- gUGACGcgggCGCCUUCCuCAACCGCGGc- -3'
miRNA:   3'- -ACUGCaa--GUGGGAGG-GUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 232856 0.74 0.743895
Target:  5'- -cGCGgaC-CCCUCCCGGCCGCGAc- -3'
miRNA:   3'- acUGCaaGuGGGAGGGUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 86695 0.74 0.753465
Target:  5'- cUGGCGcugcCGCCCUugCCCGGCCGCGAg- -3'
miRNA:   3'- -ACUGCaa--GUGGGA--GGGUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 135338 0.74 0.772282
Target:  5'- gGGCGggUugCCUCCCucCCGCGcgCg -3'
miRNA:   3'- aCUGCaaGugGGAGGGuuGGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 204050 0.73 0.78151
Target:  5'- -cGCGUg-GCCCUgCCAgucGCCGCAGUCg -3'
miRNA:   3'- acUGCAagUGGGAgGGU---UGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 138085 0.73 0.790607
Target:  5'- aGGCGcUgGCCCUCCCAgGCCGaGGUCu -3'
miRNA:   3'- aCUGCaAgUGGGAGGGU-UGGCgUUAG- -5'
13951 3' -53.3 NC_003521.1 + 18804 0.72 0.839533
Target:  5'- -uGCGUUCGCCCUgCCugcagaugcugagcGACCGCAAc- -3'
miRNA:   3'- acUGCAAGUGGGAgGG--------------UUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 104709 0.72 0.841953
Target:  5'- cGACGU--GCCCUC--GACCGCGGUCu -3'
miRNA:   3'- aCUGCAagUGGGAGggUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 8071 0.72 0.841953
Target:  5'- aGGCGUUCugCaC-CCCGacacGCCGUAAUCu -3'
miRNA:   3'- aCUGCAAGugG-GaGGGU----UGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 119629 0.72 0.865201
Target:  5'- gGACGUUUACCCa-CUGGCCGCGggCg -3'
miRNA:   3'- aCUGCAAGUGGGagGGUUGGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 224269 0.71 0.893293
Target:  5'- aGGCGcgCGCCCUcaCCCAGgUGCAcgCa -3'
miRNA:   3'- aCUGCaaGUGGGA--GGGUUgGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 222495 0.71 0.893293
Target:  5'- cGACugGUUcCugCggCCCAGCCGCGGUCa -3'
miRNA:   3'- aCUG--CAA-GugGgaGGGUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 39299 0.71 0.898488
Target:  5'- cGGCGUcaCACUCUCCCAGgcagcaucgcgaCGCAAUCg -3'
miRNA:   3'- aCUGCAa-GUGGGAGGGUUg-----------GCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 133487 0.71 0.898488
Target:  5'- cGACcgccaUCGCCCcugaacccgcgcCCCGACCGCGGUCg -3'
miRNA:   3'- aCUGca---AGUGGGa-----------GGGUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 133268 0.71 0.899764
Target:  5'- gUGGCGgcugUC-CCCgUCCCAACCcCGGUCc -3'
miRNA:   3'- -ACUGCa---AGuGGG-AGGGUUGGcGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 31262 0.71 0.899764
Target:  5'- cGGCGccgucgUCGCCCcaUCCCGAuCCGCAGc- -3'
miRNA:   3'- aCUGCa-----AGUGGG--AGGGUU-GGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 187649 0.71 0.899764
Target:  5'- cGACGgcgUCGCcgaCCUCCUcGCCGCcGUCc -3'
miRNA:   3'- aCUGCa--AGUG---GGAGGGuUGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 92549 0.7 0.912021
Target:  5'- -aGCGUUC-CCCUCCCccaacCCGgAAUCg -3'
miRNA:   3'- acUGCAAGuGGGAGGGuu---GGCgUUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.