Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13951 | 3' | -53.3 | NC_003521.1 | + | 19560 | 1.1 | 0.007004 |
Target: 5'- aUGACGUUCACCCUCCCAACCGCAAUCu -3' miRNA: 3'- -ACUGCAAGUGGGAGGGUUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 113173 | 0.78 | 0.553653 |
Target: 5'- gUGACGgg-GCCCUCCCAGgCgGCGAUCu -3' miRNA: 3'- -ACUGCaagUGGGAGGGUU-GgCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 140757 | 0.74 | 0.734228 |
Target: 5'- gUGACGcgggCGCCUUCCuCAACCGCGGc- -3' miRNA: 3'- -ACUGCaa--GUGGGAGG-GUUGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 232856 | 0.74 | 0.743895 |
Target: 5'- -cGCGgaC-CCCUCCCGGCCGCGAc- -3' miRNA: 3'- acUGCaaGuGGGAGGGUUGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 86695 | 0.74 | 0.753465 |
Target: 5'- cUGGCGcugcCGCCCUugCCCGGCCGCGAg- -3' miRNA: 3'- -ACUGCaa--GUGGGA--GGGUUGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 135338 | 0.74 | 0.772282 |
Target: 5'- gGGCGggUugCCUCCCucCCGCGcgCg -3' miRNA: 3'- aCUGCaaGugGGAGGGuuGGCGUuaG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 204050 | 0.73 | 0.78151 |
Target: 5'- -cGCGUg-GCCCUgCCAgucGCCGCAGUCg -3' miRNA: 3'- acUGCAagUGGGAgGGU---UGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 138085 | 0.73 | 0.790607 |
Target: 5'- aGGCGcUgGCCCUCCCAgGCCGaGGUCu -3' miRNA: 3'- aCUGCaAgUGGGAGGGU-UGGCgUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 18804 | 0.72 | 0.839533 |
Target: 5'- -uGCGUUCGCCCUgCCugcagaugcugagcGACCGCAAc- -3' miRNA: 3'- acUGCAAGUGGGAgGG--------------UUGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 104709 | 0.72 | 0.841953 |
Target: 5'- cGACGU--GCCCUC--GACCGCGGUCu -3' miRNA: 3'- aCUGCAagUGGGAGggUUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 8071 | 0.72 | 0.841953 |
Target: 5'- aGGCGUUCugCaC-CCCGacacGCCGUAAUCu -3' miRNA: 3'- aCUGCAAGugG-GaGGGU----UGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 119629 | 0.72 | 0.865201 |
Target: 5'- gGACGUUUACCCa-CUGGCCGCGggCg -3' miRNA: 3'- aCUGCAAGUGGGagGGUUGGCGUuaG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 224269 | 0.71 | 0.893293 |
Target: 5'- aGGCGcgCGCCCUcaCCCAGgUGCAcgCa -3' miRNA: 3'- aCUGCaaGUGGGA--GGGUUgGCGUuaG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 222495 | 0.71 | 0.893293 |
Target: 5'- cGACugGUUcCugCggCCCAGCCGCGGUCa -3' miRNA: 3'- aCUG--CAA-GugGgaGGGUUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 39299 | 0.71 | 0.898488 |
Target: 5'- cGGCGUcaCACUCUCCCAGgcagcaucgcgaCGCAAUCg -3' miRNA: 3'- aCUGCAa-GUGGGAGGGUUg-----------GCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 133487 | 0.71 | 0.898488 |
Target: 5'- cGACcgccaUCGCCCcugaacccgcgcCCCGACCGCGGUCg -3' miRNA: 3'- aCUGca---AGUGGGa-----------GGGUUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 133268 | 0.71 | 0.899764 |
Target: 5'- gUGGCGgcugUC-CCCgUCCCAACCcCGGUCc -3' miRNA: 3'- -ACUGCa---AGuGGG-AGGGUUGGcGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 31262 | 0.71 | 0.899764 |
Target: 5'- cGGCGccgucgUCGCCCcaUCCCGAuCCGCAGc- -3' miRNA: 3'- aCUGCa-----AGUGGG--AGGGUU-GGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 187649 | 0.71 | 0.899764 |
Target: 5'- cGACGgcgUCGCcgaCCUCCUcGCCGCcGUCc -3' miRNA: 3'- aCUGCa--AGUG---GGAGGGuUGGCGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 92549 | 0.7 | 0.912021 |
Target: 5'- -aGCGUUC-CCCUCCCccaacCCGgAAUCg -3' miRNA: 3'- acUGCAAGuGGGAGGGuu---GGCgUUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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