miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 92549 0.7 0.912021
Target:  5'- -aGCGUUC-CCCUCCCccaacCCGgAAUCg -3'
miRNA:   3'- acUGCAAGuGGGAGGGuu---GGCgUUAG- -5'
13951 3' -53.3 NC_003521.1 + 235907 0.7 0.912021
Target:  5'- cGGCGagggugCAcCCCUCCCAACugaaacaccaCGCGGUCg -3'
miRNA:   3'- aCUGCaa----GU-GGGAGGGUUG----------GCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 224291 0.7 0.917801
Target:  5'- cGACGg-CGCCCgcCCCGACCGCc--- -3'
miRNA:   3'- aCUGCaaGUGGGa-GGGUUGGCGuuag -5'
13951 3' -53.3 NC_003521.1 + 200165 0.7 0.917801
Target:  5'- --uCGUUUGCCCUCCUuacCCGCuGUCa -3'
miRNA:   3'- acuGCAAGUGGGAGGGuu-GGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 601 0.7 0.917801
Target:  5'- --uCGUUUGCCCUCCUuacCCGCuGUCa -3'
miRNA:   3'- acuGCAAGUGGGAGGGuu-GGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 113441 0.7 0.923347
Target:  5'- aGACGggCACCUcgcggCCCAucuugGCCGCGAg- -3'
miRNA:   3'- aCUGCaaGUGGGa----GGGU-----UGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 192510 0.7 0.928659
Target:  5'- gUGACGgcuaacggcCACCCUCCCGcggcGCCG-GGUCg -3'
miRNA:   3'- -ACUGCaa-------GUGGGAGGGU----UGGCgUUAG- -5'
13951 3' -53.3 NC_003521.1 + 196010 0.7 0.928659
Target:  5'- gUGGCGUgUCGCCCUCCgGccauCCGCucagcguuuGUCg -3'
miRNA:   3'- -ACUGCA-AGUGGGAGGgUu---GGCGu--------UAG- -5'
13951 3' -53.3 NC_003521.1 + 135004 0.7 0.928659
Target:  5'- cGGCcUUCACCa--CCAACCGCAAg- -3'
miRNA:   3'- aCUGcAAGUGGgagGGUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 55728 0.69 0.938578
Target:  5'- cGGCGcgCAgCgCCUCCCAGCgCGCGggCg -3'
miRNA:   3'- aCUGCaaGU-G-GGAGGGUUG-GCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 70866 0.69 0.943187
Target:  5'- cGACaagCGCUUUCUCAACCGCGAgcUCg -3'
miRNA:   3'- aCUGcaaGUGGGAGGGUUGGCGUU--AG- -5'
13951 3' -53.3 NC_003521.1 + 31183 0.69 0.943187
Target:  5'- cGACGUgccccaggacCGCUCUCgCCuGCCGCAGUUc -3'
miRNA:   3'- aCUGCAa---------GUGGGAG-GGuUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 77695 0.69 0.951714
Target:  5'- cGGCGg-CAUCCUCUCGGCCGUGgccccGUCg -3'
miRNA:   3'- aCUGCaaGUGGGAGGGUUGGCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 68428 0.69 0.951714
Target:  5'- cGACGgcuccgccggCGCCC-CUCAACCGCGugccgGUCa -3'
miRNA:   3'- aCUGCaa--------GUGGGaGGGUUGGCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 116457 0.69 0.955636
Target:  5'- cGACG-UCuCCCUCCUcuCCGCGGc- -3'
miRNA:   3'- aCUGCaAGuGGGAGGGuuGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 216031 0.68 0.959337
Target:  5'- gUGACGUUCGCgCCcUUCAGCgGCAacgcGUCg -3'
miRNA:   3'- -ACUGCAAGUG-GGaGGGUUGgCGU----UAG- -5'
13951 3' -53.3 NC_003521.1 + 77926 0.68 0.959337
Target:  5'- cGGCcugCugUCUCCCGACgGCAGUUc -3'
miRNA:   3'- aCUGcaaGugGGAGGGUUGgCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 120514 0.68 0.961453
Target:  5'- cGACGUggcuuuuuauagaCACCC-CCCGAgCGCGGUg -3'
miRNA:   3'- aCUGCAa------------GUGGGaGGGUUgGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 181707 0.68 0.96282
Target:  5'- aUGACGUUUucCCCUCCCuuuACaGCAcacacGUCa -3'
miRNA:   3'- -ACUGCAAGu-GGGAGGGu--UGgCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 123504 0.68 0.96282
Target:  5'- gUGuCGUcgUCGCCgCUgCCGcCCGCAAUCc -3'
miRNA:   3'- -ACuGCA--AGUGG-GAgGGUuGGCGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.