miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 116210 0.66 0.98842
Target:  5'- aGACG-UCGCCgUCgCCG-CCGCuucGUCg -3'
miRNA:   3'- aCUGCaAGUGGgAG-GGUuGGCGu--UAG- -5'
13951 3' -53.3 NC_003521.1 + 196372 0.66 0.98842
Target:  5'- gUGGCGUUgUACUCgcaucgCCgAGCCGCcGUCa -3'
miRNA:   3'- -ACUGCAA-GUGGGa-----GGgUUGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 160776 0.66 0.98842
Target:  5'- aGGCugcCGCCCccuccUCCC-GCCGCGGUCu -3'
miRNA:   3'- aCUGcaaGUGGG-----AGGGuUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 202914 0.66 0.988277
Target:  5'- gGGCGUcCcagcgggGCCgCUCCCAguGCuCGCGGUCg -3'
miRNA:   3'- aCUGCAaG-------UGG-GAGGGU--UG-GCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 238402 0.66 0.988277
Target:  5'- gGGCGUcCcagcgggGCCgCUCCCAguGCuCGCGGUCg -3'
miRNA:   3'- aCUGCAaG-------UGG-GAGGGU--UG-GCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 13162 0.66 0.986928
Target:  5'- gUGuACGUcUCAggaCCUCCCGgacgGCCGCuGUCa -3'
miRNA:   3'- -AC-UGCA-AGUg--GGAGGGU----UGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 21132 0.66 0.986928
Target:  5'- cGACGaccCGCCagagaUCCCAgaguACCgGCAGUCg -3'
miRNA:   3'- aCUGCaa-GUGGg----AGGGU----UGG-CGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 189974 0.66 0.986928
Target:  5'- gGAccCGUcCACCUUCUCAaaaaGCCGCcGUCa -3'
miRNA:   3'- aCU--GCAaGUGGGAGGGU----UGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 141082 0.66 0.986928
Target:  5'- cGACGUggagGCCCUCCUguGGCUGCu--- -3'
miRNA:   3'- aCUGCAag--UGGGAGGG--UUGGCGuuag -5'
13951 3' -53.3 NC_003521.1 + 165019 0.66 0.986928
Target:  5'- ---gGUUCGCCCgg-CGACCGCGAUg -3'
miRNA:   3'- acugCAAGUGGGaggGUUGGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 150911 0.66 0.986452
Target:  5'- cGACuGcgCGCCCUUCCAcggcgugugggccgAgCGCGGUCa -3'
miRNA:   3'- aCUG-CaaGUGGGAGGGU--------------UgGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 42665 0.66 0.985291
Target:  5'- aUGACGccggUUCGCCaCUCCUAcGCCacGCGAUUg -3'
miRNA:   3'- -ACUGC----AAGUGG-GAGGGU-UGG--CGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 26112 0.66 0.985291
Target:  5'- cGugGUUCGCgucuCCgugUCCCAACUGUAcgCc -3'
miRNA:   3'- aCugCAAGUG----GG---AGGGUUGGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 32795 0.66 0.985291
Target:  5'- aGACccgCGCCCUCCagcauACgGCGGUCc -3'
miRNA:   3'- aCUGcaaGUGGGAGGgu---UGgCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 83771 0.66 0.985291
Target:  5'- gUGGCGg-CGCCC-CCC-GCCGCGcUCc -3'
miRNA:   3'- -ACUGCaaGUGGGaGGGuUGGCGUuAG- -5'
13951 3' -53.3 NC_003521.1 + 64991 0.66 0.985291
Target:  5'- cGACGUgCGCCgCUUCUugGACCGCGc-- -3'
miRNA:   3'- aCUGCAaGUGG-GAGGG--UUGGCGUuag -5'
13951 3' -53.3 NC_003521.1 + 36706 0.67 0.983502
Target:  5'- gUGAUGgu-GCCCUUCguGCCGCAcgCc -3'
miRNA:   3'- -ACUGCaagUGGGAGGguUGGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 36110 0.67 0.983502
Target:  5'- ------cCACCCUCCCcGCCGUgguGGUCa -3'
miRNA:   3'- acugcaaGUGGGAGGGuUGGCG---UUAG- -5'
13951 3' -53.3 NC_003521.1 + 165273 0.67 0.983502
Target:  5'- cGGCGaUCGCggCCUCCUcGCUGgGAUCg -3'
miRNA:   3'- aCUGCaAGUG--GGAGGGuUGGCgUUAG- -5'
13951 3' -53.3 NC_003521.1 + 217804 0.67 0.983502
Target:  5'- cGACGUgCACCgCUUCCugguCUGCAcgCg -3'
miRNA:   3'- aCUGCAaGUGG-GAGGGuu--GGCGUuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.