miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 49198 0.66 0.991007
Target:  5'- --cCGcUUCuCCCUCCCcGCCGCugauAGUCg -3'
miRNA:   3'- acuGC-AAGuGGGAGGGuUGGCG----UUAG- -5'
13951 3' -53.3 NC_003521.1 + 49351 0.66 0.991007
Target:  5'- uUGugGauaUCGCCC-CCCGuCCGaCGGUCc -3'
miRNA:   3'- -ACugCa--AGUGGGaGGGUuGGC-GUUAG- -5'
13951 3' -53.3 NC_003521.1 + 52394 0.68 0.96282
Target:  5'- cGAUG--CACCCUCCCAccACgGCGuAUCu -3'
miRNA:   3'- aCUGCaaGUGGGAGGGU--UGgCGU-UAG- -5'
13951 3' -53.3 NC_003521.1 + 55728 0.69 0.938578
Target:  5'- cGGCGcgCAgCgCCUCCCAGCgCGCGggCg -3'
miRNA:   3'- aCUGCaaGU-G-GGAGGGUUG-GCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 58100 0.66 0.991007
Target:  5'- cGGCGUUCGgCgUCaCCGGCCGagcuUCa -3'
miRNA:   3'- aCUGCAAGUgGgAG-GGUUGGCguu-AG- -5'
13951 3' -53.3 NC_003521.1 + 62914 0.67 0.981554
Target:  5'- cGACGa-CGCCCUCCCGcUCGCc--- -3'
miRNA:   3'- aCUGCaaGUGGGAGGGUuGGCGuuag -5'
13951 3' -53.3 NC_003521.1 + 64991 0.66 0.985291
Target:  5'- cGACGUgCGCCgCUUCUugGACCGCGc-- -3'
miRNA:   3'- aCUGCAaGUGG-GAGGG--UUGGCGUuag -5'
13951 3' -53.3 NC_003521.1 + 66601 0.66 0.989778
Target:  5'- cGACGcgC-CCCUgCCCGACCcGCGc-- -3'
miRNA:   3'- aCUGCaaGuGGGA-GGGUUGG-CGUuag -5'
13951 3' -53.3 NC_003521.1 + 68428 0.69 0.951714
Target:  5'- cGACGgcuccgccggCGCCC-CUCAACCGCGugccgGUCa -3'
miRNA:   3'- aCUGCaa--------GUGGGaGGGUUGGCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 70866 0.69 0.943187
Target:  5'- cGACaagCGCUUUCUCAACCGCGAgcUCg -3'
miRNA:   3'- aCUGcaaGUGGGAGGGUUGGCGUU--AG- -5'
13951 3' -53.3 NC_003521.1 + 77695 0.69 0.951714
Target:  5'- cGGCGg-CAUCCUCUCGGCCGUGgccccGUCg -3'
miRNA:   3'- aCUGCaaGUGGGAGGGUUGGCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 77926 0.68 0.959337
Target:  5'- cGGCcugCugUCUCCCGACgGCAGUUc -3'
miRNA:   3'- aCUGcaaGugGGAGGGUUGgCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 82451 0.68 0.966089
Target:  5'- cUGAUGUUgACCCcgaugacaucgUCCGGCCGCAGg- -3'
miRNA:   3'- -ACUGCAAgUGGGa----------GGGUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 83598 0.67 0.979438
Target:  5'- gGACcccuGUUCACCCacugCaCCGACCGCuacccccuGUCg -3'
miRNA:   3'- aCUG----CAAGUGGGa---G-GGUUGGCGu-------UAG- -5'
13951 3' -53.3 NC_003521.1 + 83771 0.66 0.985291
Target:  5'- gUGGCGg-CGCCC-CCC-GCCGCGcUCc -3'
miRNA:   3'- -ACUGCaaGUGGGaGGGuUGGCGUuAG- -5'
13951 3' -53.3 NC_003521.1 + 86695 0.74 0.753465
Target:  5'- cUGGCGcugcCGCCCUugCCCGGCCGCGAg- -3'
miRNA:   3'- -ACUGCaa--GUGGGA--GGGUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 92549 0.7 0.912021
Target:  5'- -aGCGUUC-CCCUCCCccaacCCGgAAUCg -3'
miRNA:   3'- acUGCAAGuGGGAGGGuu---GGCgUUAG- -5'
13951 3' -53.3 NC_003521.1 + 99729 0.68 0.966089
Target:  5'- aGGCGUcgUCGCgCaCCCAGCCGC--UCa -3'
miRNA:   3'- aCUGCA--AGUGgGaGGGUUGGCGuuAG- -5'
13951 3' -53.3 NC_003521.1 + 104709 0.72 0.841953
Target:  5'- cGACGU--GCCCUC--GACCGCGGUCu -3'
miRNA:   3'- aCUGCAagUGGGAGggUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 108534 0.66 0.989778
Target:  5'- cGACGgcgaccuggUCACCCggacCCUGGCCGUAu-- -3'
miRNA:   3'- aCUGCa--------AGUGGGa---GGGUUGGCGUuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.