miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 111464 0.66 0.991007
Target:  5'- cGGCGccaUCGCCCagCCCAccguCCGCGgcgccGUCg -3'
miRNA:   3'- aCUGCa--AGUGGGa-GGGUu---GGCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 113173 0.78 0.553653
Target:  5'- gUGACGgg-GCCCUCCCAGgCgGCGAUCu -3'
miRNA:   3'- -ACUGCaagUGGGAGGGUU-GgCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 113441 0.7 0.923347
Target:  5'- aGACGggCACCUcgcggCCCAucuugGCCGCGAg- -3'
miRNA:   3'- aCUGCaaGUGGGa----GGGU-----UGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 116210 0.66 0.98842
Target:  5'- aGACG-UCGCCgUCgCCG-CCGCuucGUCg -3'
miRNA:   3'- aCUGCaAGUGGgAG-GGUuGGCGu--UAG- -5'
13951 3' -53.3 NC_003521.1 + 116457 0.69 0.955636
Target:  5'- cGACG-UCuCCCUCCUcuCCGCGGc- -3'
miRNA:   3'- aCUGCaAGuGGGAGGGuuGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 117251 0.66 0.992117
Target:  5'- cGGCGccgcCGCCaUCCCGccACCGCcGUCg -3'
miRNA:   3'- aCUGCaa--GUGGgAGGGU--UGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 118902 0.66 0.991007
Target:  5'- aUGAgGUccUCGCCCUCgUCGgcGCCGCGGc- -3'
miRNA:   3'- -ACUgCA--AGUGGGAG-GGU--UGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 119615 0.67 0.974673
Target:  5'- cGGCGUgucCAuggaggccggacCCCUgCCCGACCGCGugcgcAUCa -3'
miRNA:   3'- aCUGCAa--GU------------GGGA-GGGUUGGCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 119629 0.72 0.865201
Target:  5'- gGACGUUUACCCa-CUGGCCGCGggCg -3'
miRNA:   3'- aCUGCAAGUGGGagGGUUGGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 119933 0.68 0.96915
Target:  5'- cUGACGggCACCCgCuCCAGggGCAGUCc -3'
miRNA:   3'- -ACUGCaaGUGGGaG-GGUUggCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 120514 0.68 0.961453
Target:  5'- cGACGUggcuuuuuauagaCACCC-CCCGAgCGCGGUg -3'
miRNA:   3'- aCUGCAa------------GUGGGaGGGUUgGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 123504 0.68 0.96282
Target:  5'- gUGuCGUcgUCGCCgCUgCCGcCCGCAAUCc -3'
miRNA:   3'- -ACuGCA--AGUGG-GAgGGUuGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 124922 0.66 0.989778
Target:  5'- cGACGccaccUUCACgCUgCCCGACCcgGUGAUCg -3'
miRNA:   3'- aCUGC-----AAGUGgGA-GGGUUGG--CGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 126939 0.66 0.989778
Target:  5'- cUGGCGgu-GCCCUUCC-ACCGCu-UCu -3'
miRNA:   3'- -ACUGCaagUGGGAGGGuUGGCGuuAG- -5'
13951 3' -53.3 NC_003521.1 + 133268 0.71 0.899764
Target:  5'- gUGGCGgcugUC-CCCgUCCCAACCcCGGUCc -3'
miRNA:   3'- -ACUGCa---AGuGGG-AGGGUUGGcGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 133487 0.71 0.898488
Target:  5'- cGACcgccaUCGCCCcugaacccgcgcCCCGACCGCGGUCg -3'
miRNA:   3'- aCUGca---AGUGGGa-----------GGGUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 135004 0.7 0.928659
Target:  5'- cGGCcUUCACCa--CCAACCGCAAg- -3'
miRNA:   3'- aCUGcAAGUGGgagGGUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 135338 0.74 0.772282
Target:  5'- gGGCGggUugCCUCCCucCCGCGcgCg -3'
miRNA:   3'- aCUGCaaGugGGAGGGuuGGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 138085 0.73 0.790607
Target:  5'- aGGCGcUgGCCCUCCCAgGCCGaGGUCu -3'
miRNA:   3'- aCUGCaAgUGGGAGGGU-UGGCgUUAG- -5'
13951 3' -53.3 NC_003521.1 + 139791 0.67 0.978994
Target:  5'- uUGGCG-UCGCCCUCggcgguggcgaAGCCGCcGUCg -3'
miRNA:   3'- -ACUGCaAGUGGGAGgg---------UUGGCGuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.