miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 200165 0.7 0.917801
Target:  5'- --uCGUUUGCCCUCCUuacCCGCuGUCa -3'
miRNA:   3'- acuGCAAGUGGGAGGGuu-GGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 156035 0.68 0.96915
Target:  5'- cGACGU--GCCCUCCCu-CUGCu-UCg -3'
miRNA:   3'- aCUGCAagUGGGAGGGuuGGCGuuAG- -5'
13951 3' -53.3 NC_003521.1 + 119933 0.68 0.96915
Target:  5'- cUGACGggCACCCgCuCCAGggGCAGUCc -3'
miRNA:   3'- -ACUGCaaGUGGGaG-GGUUggCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 82451 0.68 0.966089
Target:  5'- cUGAUGUUgACCCcgaugacaucgUCCGGCCGCAGg- -3'
miRNA:   3'- -ACUGCAAgUGGGa----------GGGUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 162572 0.68 0.966089
Target:  5'- cGACGggcuucagCGCUCUgCCGGCUGCGGUg -3'
miRNA:   3'- aCUGCaa------GUGGGAgGGUUGGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 99729 0.68 0.966089
Target:  5'- aGGCGUcgUCGCgCaCCCAGCCGC--UCa -3'
miRNA:   3'- aCUGCA--AGUGgGaGGGUUGGCGuuAG- -5'
13951 3' -53.3 NC_003521.1 + 181707 0.68 0.96282
Target:  5'- aUGACGUUUucCCCUCCCuuuACaGCAcacacGUCa -3'
miRNA:   3'- -ACUGCAAGu-GGGAGGGu--UGgCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 123504 0.68 0.96282
Target:  5'- gUGuCGUcgUCGCCgCUgCCGcCCGCAAUCc -3'
miRNA:   3'- -ACuGCA--AGUGG-GAgGGUuGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 120514 0.68 0.961453
Target:  5'- cGACGUggcuuuuuauagaCACCC-CCCGAgCGCGGUg -3'
miRNA:   3'- aCUGCAa------------GUGGGaGGGUUgGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 68428 0.69 0.951714
Target:  5'- cGACGgcuccgccggCGCCC-CUCAACCGCGugccgGUCa -3'
miRNA:   3'- aCUGCaa--------GUGGGaGGGUUGGCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 55728 0.69 0.938578
Target:  5'- cGGCGcgCAgCgCCUCCCAGCgCGCGggCg -3'
miRNA:   3'- aCUGCaaGU-G-GGAGGGUUG-GCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 196010 0.7 0.928659
Target:  5'- gUGGCGUgUCGCCCUCCgGccauCCGCucagcguuuGUCg -3'
miRNA:   3'- -ACUGCA-AGUGGGAGGgUu---GGCGu--------UAG- -5'
13951 3' -53.3 NC_003521.1 + 31262 0.71 0.899764
Target:  5'- cGGCGccgucgUCGCCCcaUCCCGAuCCGCAGc- -3'
miRNA:   3'- aCUGCa-----AGUGGG--AGGGUU-GGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 133268 0.71 0.899764
Target:  5'- gUGGCGgcugUC-CCCgUCCCAACCcCGGUCc -3'
miRNA:   3'- -ACUGCa---AGuGGG-AGGGUUGGcGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 133487 0.71 0.898488
Target:  5'- cGACcgccaUCGCCCcugaacccgcgcCCCGACCGCGGUCg -3'
miRNA:   3'- aCUGca---AGUGGGa-----------GGGUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 222495 0.71 0.893293
Target:  5'- cGACugGUUcCugCggCCCAGCCGCGGUCa -3'
miRNA:   3'- aCUG--CAA-GugGgaGGGUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 8071 0.72 0.841953
Target:  5'- aGGCGUUCugCaC-CCCGacacGCCGUAAUCu -3'
miRNA:   3'- aCUGCAAGugG-GaGGGU----UGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 140757 0.74 0.734228
Target:  5'- gUGACGcgggCGCCUUCCuCAACCGCGGc- -3'
miRNA:   3'- -ACUGCaa--GUGGGAGG-GUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 113173 0.78 0.553653
Target:  5'- gUGACGgg-GCCCUCCCAGgCgGCGAUCu -3'
miRNA:   3'- -ACUGCaagUGGGAGGGUU-GgCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 27381 0.66 0.992117
Target:  5'- aUGGaGUUCGCCCgcaCCGGCCuGCGcgccGUCg -3'
miRNA:   3'- -ACUgCAAGUGGGag-GGUUGG-CGU----UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.