Results 41 - 60 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13951 | 3' | -53.3 | NC_003521.1 | + | 233148 | 0.67 | 0.977146 |
Target: 5'- -cGCGUagcUCAUCCUCCagaucGCCGCGGUg -3' miRNA: 3'- acUGCA---AGUGGGAGGgu---UGGCGUUAg -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 235767 | 0.67 | 0.974673 |
Target: 5'- cGGCGU--GCCC-CgCCGGCCGCGAc- -3' miRNA: 3'- aCUGCAagUGGGaG-GGUUGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 217804 | 0.67 | 0.983502 |
Target: 5'- cGACGUgCACCgCUUCCugguCUGCAcgCg -3' miRNA: 3'- aCUGCAaGUGG-GAGGGuu--GGCGUuaG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 164987 | 0.67 | 0.981554 |
Target: 5'- gGACGgacuggagaUCAUCgaUCCCAgcgaggagGCCGCGAUCg -3' miRNA: 3'- aCUGCa--------AGUGGg-AGGGU--------UGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 194493 | 0.67 | 0.980937 |
Target: 5'- cGACGacgCGCCCUCCUcgcacaagauGGCCGUcauagauucgcugcGAUCg -3' miRNA: 3'- aCUGCaa-GUGGGAGGG----------UUGGCG--------------UUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 36110 | 0.67 | 0.983502 |
Target: 5'- ------cCACCCUCCCcGCCGUgguGGUCa -3' miRNA: 3'- acugcaaGUGGGAGGGuUGGCG---UUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 36706 | 0.67 | 0.983502 |
Target: 5'- gUGAUGgu-GCCCUUCguGCCGCAcgCc -3' miRNA: 3'- -ACUGCaagUGGGAGGguUGGCGUuaG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 139791 | 0.67 | 0.978994 |
Target: 5'- uUGGCG-UCGCCCUCggcgguggcgaAGCCGCcGUCg -3' miRNA: 3'- -ACUGCaAGUGGGAGgg---------UUGGCGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 192109 | 0.67 | 0.974673 |
Target: 5'- cGGCGUcucCACCuCUCCCGGCCuC-GUCg -3' miRNA: 3'- aCUGCAa--GUGG-GAGGGUUGGcGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 83598 | 0.67 | 0.979438 |
Target: 5'- gGACcccuGUUCACCCacugCaCCGACCGCuacccccuGUCg -3' miRNA: 3'- aCUG----CAAGUGGGa---G-GGUUGGCGu-------UAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 62914 | 0.67 | 0.981554 |
Target: 5'- cGACGa-CGCCCUCCCGcUCGCc--- -3' miRNA: 3'- aCUGCaaGUGGGAGGGUuGGCGuuag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 156035 | 0.68 | 0.96915 |
Target: 5'- cGACGU--GCCCUCCCu-CUGCu-UCg -3' miRNA: 3'- aCUGCAagUGGGAGGGuuGGCGuuAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 162572 | 0.68 | 0.966089 |
Target: 5'- cGACGggcuucagCGCUCUgCCGGCUGCGGUg -3' miRNA: 3'- aCUGCaa------GUGGGAgGGUUGGCGUUAg -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 199444 | 0.68 | 0.96282 |
Target: 5'- -aACGUUCGCUUUCCUAACagaacaGCAAUa -3' miRNA: 3'- acUGCAAGUGGGAGGGUUGg-----CGUUAg -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 178706 | 0.68 | 0.973098 |
Target: 5'- uUGACGUUCACCCaggCCaaCAACCagaccuacagcuacuGCAcgCa -3' miRNA: 3'- -ACUGCAAGUGGGa--GG--GUUGG---------------CGUuaG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 99729 | 0.68 | 0.966089 |
Target: 5'- aGGCGUcgUCGCgCaCCCAGCCGC--UCa -3' miRNA: 3'- aCUGCA--AGUGgGaGGGUUGGCGuuAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 77926 | 0.68 | 0.959337 |
Target: 5'- cGGCcugCugUCUCCCGACgGCAGUUc -3' miRNA: 3'- aCUGcaaGugGGAGGGUUGgCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 216031 | 0.68 | 0.959337 |
Target: 5'- gUGACGUUCGCgCCcUUCAGCgGCAacgcGUCg -3' miRNA: 3'- -ACUGCAAGUG-GGaGGGUUGgCGU----UAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 119933 | 0.68 | 0.96915 |
Target: 5'- cUGACGggCACCCgCuCCAGggGCAGUCc -3' miRNA: 3'- -ACUGCaaGUGGGaG-GGUUggCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 52394 | 0.68 | 0.96282 |
Target: 5'- cGAUG--CACCCUCCCAccACgGCGuAUCu -3' miRNA: 3'- aCUGCaaGUGGGAGGGU--UGgCGU-UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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