miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 120514 0.68 0.961453
Target:  5'- cGACGUggcuuuuuauagaCACCC-CCCGAgCGCGGUg -3'
miRNA:   3'- aCUGCAa------------GUGGGaGGGUUgGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 119933 0.68 0.96915
Target:  5'- cUGACGggCACCCgCuCCAGggGCAGUCc -3'
miRNA:   3'- -ACUGCaaGUGGGaG-GGUUggCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 216031 0.68 0.959337
Target:  5'- gUGACGUUCGCgCCcUUCAGCgGCAacgcGUCg -3'
miRNA:   3'- -ACUGCAAGUG-GGaGGGUUGgCGU----UAG- -5'
13951 3' -53.3 NC_003521.1 + 77926 0.68 0.959337
Target:  5'- cGGCcugCugUCUCCCGACgGCAGUUc -3'
miRNA:   3'- aCUGcaaGugGGAGGGUUGgCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 82451 0.68 0.966089
Target:  5'- cUGAUGUUgACCCcgaugacaucgUCCGGCCGCAGg- -3'
miRNA:   3'- -ACUGCAAgUGGGa----------GGGUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 162572 0.68 0.966089
Target:  5'- cGACGggcuucagCGCUCUgCCGGCUGCGGUg -3'
miRNA:   3'- aCUGCaa------GUGGGAgGGUUGGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 99729 0.68 0.966089
Target:  5'- aGGCGUcgUCGCgCaCCCAGCCGC--UCa -3'
miRNA:   3'- aCUGCA--AGUGgGaGGGUUGGCGuuAG- -5'
13951 3' -53.3 NC_003521.1 + 181707 0.68 0.96282
Target:  5'- aUGACGUUUucCCCUCCCuuuACaGCAcacacGUCa -3'
miRNA:   3'- -ACUGCAAGu-GGGAGGGu--UGgCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 211134 0.68 0.972009
Target:  5'- cGACGUaCACCCUgggCCCuacGCCGgUGGUCu -3'
miRNA:   3'- aCUGCAaGUGGGA---GGGu--UGGC-GUUAG- -5'
13951 3' -53.3 NC_003521.1 + 151512 0.67 0.974673
Target:  5'- cGuCG-UCGCCgUCCCAgGCCGCGGa- -3'
miRNA:   3'- aCuGCaAGUGGgAGGGU-UGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 192109 0.67 0.974673
Target:  5'- cGGCGUcucCACCuCUCCCGGCCuC-GUCg -3'
miRNA:   3'- aCUGCAa--GUGG-GAGGGUUGGcGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 139791 0.67 0.978994
Target:  5'- uUGGCG-UCGCCCUCggcgguggcgaAGCCGCcGUCg -3'
miRNA:   3'- -ACUGCaAGUGGGAGgg---------UUGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 194493 0.67 0.980937
Target:  5'- cGACGacgCGCCCUCCUcgcacaagauGGCCGUcauagauucgcugcGAUCg -3'
miRNA:   3'- aCUGCaa-GUGGGAGGG----------UUGGCG--------------UUAG- -5'
13951 3' -53.3 NC_003521.1 + 62914 0.67 0.981554
Target:  5'- cGACGa-CGCCCUCCCGcUCGCc--- -3'
miRNA:   3'- aCUGCaaGUGGGAGGGUuGGCGuuag -5'
13951 3' -53.3 NC_003521.1 + 164987 0.67 0.981554
Target:  5'- gGACGgacuggagaUCAUCgaUCCCAgcgaggagGCCGCGAUCg -3'
miRNA:   3'- aCUGCa--------AGUGGg-AGGGU--------UGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 235767 0.67 0.974673
Target:  5'- cGGCGU--GCCC-CgCCGGCCGCGAc- -3'
miRNA:   3'- aCUGCAagUGGGaG-GGUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 36706 0.67 0.983502
Target:  5'- gUGAUGgu-GCCCUUCguGCCGCAcgCc -3'
miRNA:   3'- -ACUGCaagUGGGAGGguUGGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 7383 0.67 0.983502
Target:  5'- gGuACGUUaCGCCCUgCCCGGCCaCAAa- -3'
miRNA:   3'- aC-UGCAA-GUGGGA-GGGUUGGcGUUag -5'
13951 3' -53.3 NC_003521.1 + 119615 0.67 0.974673
Target:  5'- cGGCGUgucCAuggaggccggacCCCUgCCCGACCGCGugcgcAUCa -3'
miRNA:   3'- aCUGCAa--GU------------GGGA-GGGUUGGCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 36110 0.67 0.983502
Target:  5'- ------cCACCCUCCCcGCCGUgguGGUCa -3'
miRNA:   3'- acugcaaGUGGGAGGGuUGGCG---UUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.