Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13951 | 3' | -53.3 | NC_003521.1 | + | 235907 | 0.7 | 0.912021 |
Target: 5'- cGGCGagggugCAcCCCUCCCAACugaaacaccaCGCGGUCg -3' miRNA: 3'- aCUGCaa----GU-GGGAGGGUUG----------GCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 192510 | 0.7 | 0.928659 |
Target: 5'- gUGACGgcuaacggcCACCCUCCCGcggcGCCG-GGUCg -3' miRNA: 3'- -ACUGCaa-------GUGGGAGGGU----UGGCgUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 113441 | 0.7 | 0.923347 |
Target: 5'- aGACGggCACCUcgcggCCCAucuugGCCGCGAg- -3' miRNA: 3'- aCUGCaaGUGGGa----GGGU-----UGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 601 | 0.7 | 0.917801 |
Target: 5'- --uCGUUUGCCCUCCUuacCCGCuGUCa -3' miRNA: 3'- acuGCAAGUGGGAGGGuu-GGCGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 200165 | 0.7 | 0.917801 |
Target: 5'- --uCGUUUGCCCUCCUuacCCGCuGUCa -3' miRNA: 3'- acuGCAAGUGGGAGGGuu-GGCGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 92549 | 0.7 | 0.912021 |
Target: 5'- -aGCGUUC-CCCUCCCccaacCCGgAAUCg -3' miRNA: 3'- acUGCAAGuGGGAGGGuu---GGCgUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 171044 | 0.7 | 0.912021 |
Target: 5'- aGAUGUUCACCCccggCUCGcCCGUccGAUCa -3' miRNA: 3'- aCUGCAAGUGGGa---GGGUuGGCG--UUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 224291 | 0.7 | 0.917801 |
Target: 5'- cGACGg-CGCCCgcCCCGACCGCc--- -3' miRNA: 3'- aCUGCaaGUGGGa-GGGUUGGCGuuag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 196010 | 0.7 | 0.928659 |
Target: 5'- gUGGCGUgUCGCCCUCCgGccauCCGCucagcguuuGUCg -3' miRNA: 3'- -ACUGCA-AGUGGGAGGgUu---GGCGu--------UAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 55728 | 0.69 | 0.938578 |
Target: 5'- cGGCGcgCAgCgCCUCCCAGCgCGCGggCg -3' miRNA: 3'- aCUGCaaGU-G-GGAGGGUUG-GCGUuaG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 70866 | 0.69 | 0.943187 |
Target: 5'- cGACaagCGCUUUCUCAACCGCGAgcUCg -3' miRNA: 3'- aCUGcaaGUGGGAGGGUUGGCGUU--AG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 77695 | 0.69 | 0.951714 |
Target: 5'- cGGCGg-CAUCCUCUCGGCCGUGgccccGUCg -3' miRNA: 3'- aCUGCaaGUGGGAGGGUUGGCGU-----UAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 116457 | 0.69 | 0.955636 |
Target: 5'- cGACG-UCuCCCUCCUcuCCGCGGc- -3' miRNA: 3'- aCUGCaAGuGGGAGGGuuGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 31183 | 0.69 | 0.943187 |
Target: 5'- cGACGUgccccaggacCGCUCUCgCCuGCCGCAGUUc -3' miRNA: 3'- aCUGCAa---------GUGGGAG-GGuUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 68428 | 0.69 | 0.951714 |
Target: 5'- cGACGgcuccgccggCGCCC-CUCAACCGCGugccgGUCa -3' miRNA: 3'- aCUGCaa--------GUGGGaGGGUUGGCGU-----UAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 119933 | 0.68 | 0.96915 |
Target: 5'- cUGACGggCACCCgCuCCAGggGCAGUCc -3' miRNA: 3'- -ACUGCaaGUGGGaG-GGUUggCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 156035 | 0.68 | 0.96915 |
Target: 5'- cGACGU--GCCCUCCCu-CUGCu-UCg -3' miRNA: 3'- aCUGCAagUGGGAGGGuuGGCGuuAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 162572 | 0.68 | 0.966089 |
Target: 5'- cGACGggcuucagCGCUCUgCCGGCUGCGGUg -3' miRNA: 3'- aCUGCaa------GUGGGAgGGUUGGCGUUAg -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 120514 | 0.68 | 0.961453 |
Target: 5'- cGACGUggcuuuuuauagaCACCC-CCCGAgCGCGGUg -3' miRNA: 3'- aCUGCAa------------GUGGGaGGGUUgGCGUUAg -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 82451 | 0.68 | 0.966089 |
Target: 5'- cUGAUGUUgACCCcgaugacaucgUCCGGCCGCAGg- -3' miRNA: 3'- -ACUGCAAgUGGGa----------GGGUUGGCGUUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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