miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 601 0.7 0.917801
Target:  5'- --uCGUUUGCCCUCCUuacCCGCuGUCa -3'
miRNA:   3'- acuGCAAGUGGGAGGGuu-GGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 7383 0.67 0.983502
Target:  5'- gGuACGUUaCGCCCUgCCCGGCCaCAAa- -3'
miRNA:   3'- aC-UGCAA-GUGGGA-GGGUUGGcGUUag -5'
13951 3' -53.3 NC_003521.1 + 8071 0.72 0.841953
Target:  5'- aGGCGUUCugCaC-CCCGacacGCCGUAAUCu -3'
miRNA:   3'- aCUGCAAGugG-GaGGGU----UGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 12238 0.66 0.989778
Target:  5'- cGACGgcagaccUCACUCUCgcugCCgAGCUGCAGUCc -3'
miRNA:   3'- aCUGCa------AGUGGGAG----GG-UUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 13162 0.66 0.986928
Target:  5'- gUGuACGUcUCAggaCCUCCCGgacgGCCGCuGUCa -3'
miRNA:   3'- -AC-UGCA-AGUg--GGAGGGU----UGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 13199 0.66 0.98842
Target:  5'- aGAUGUUgcUCCUCCCGGCCcUggUCc -3'
miRNA:   3'- aCUGCAAguGGGAGGGUUGGcGuuAG- -5'
13951 3' -53.3 NC_003521.1 + 17896 0.66 0.990651
Target:  5'- cGGUGUUCucuUCCUCCCAgcggguucguauacGCCGCGAc- -3'
miRNA:   3'- aCUGCAAGu--GGGAGGGU--------------UGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 18804 0.72 0.839533
Target:  5'- -uGCGUUCGCCCUgCCugcagaugcugagcGACCGCAAc- -3'
miRNA:   3'- acUGCAAGUGGGAgGG--------------UUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 19560 1.1 0.007004
Target:  5'- aUGACGUUCACCCUCCCAACCGCAAUCu -3'
miRNA:   3'- -ACUGCAAGUGGGAGGGUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 21132 0.66 0.986928
Target:  5'- cGACGaccCGCCagagaUCCCAgaguACCgGCAGUCg -3'
miRNA:   3'- aCUGCaa-GUGGg----AGGGU----UGG-CGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 26112 0.66 0.985291
Target:  5'- cGugGUUCGCgucuCCgugUCCCAACUGUAcgCc -3'
miRNA:   3'- aCugCAAGUG----GG---AGGGUUGGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 27381 0.66 0.992117
Target:  5'- aUGGaGUUCGCCCgcaCCGGCCuGCGcgccGUCg -3'
miRNA:   3'- -ACUgCAAGUGGGag-GGUUGG-CGU----UAG- -5'
13951 3' -53.3 NC_003521.1 + 27837 0.66 0.992117
Target:  5'- gGACGUg--UUCgUCCAGCCGCGGUCu -3'
miRNA:   3'- aCUGCAaguGGGaGGGUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 31183 0.69 0.943187
Target:  5'- cGACGUgccccaggacCGCUCUCgCCuGCCGCAGUUc -3'
miRNA:   3'- aCUGCAa---------GUGGGAG-GGuUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 31262 0.71 0.899764
Target:  5'- cGGCGccgucgUCGCCCcaUCCCGAuCCGCAGc- -3'
miRNA:   3'- aCUGCa-----AGUGGG--AGGGUU-GGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 32795 0.66 0.985291
Target:  5'- aGACccgCGCCCUCCagcauACgGCGGUCc -3'
miRNA:   3'- aCUGcaaGUGGGAGGgu---UGgCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 36110 0.67 0.983502
Target:  5'- ------cCACCCUCCCcGCCGUgguGGUCa -3'
miRNA:   3'- acugcaaGUGGGAGGGuUGGCG---UUAG- -5'
13951 3' -53.3 NC_003521.1 + 36706 0.67 0.983502
Target:  5'- gUGAUGgu-GCCCUUCguGCCGCAcgCc -3'
miRNA:   3'- -ACUGCaagUGGGAGGguUGGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 39299 0.71 0.898488
Target:  5'- cGGCGUcaCACUCUCCCAGgcagcaucgcgaCGCAAUCg -3'
miRNA:   3'- aCUGCAa-GUGGGAGGGUUg-----------GCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 42665 0.66 0.985291
Target:  5'- aUGACGccggUUCGCCaCUCCUAcGCCacGCGAUUg -3'
miRNA:   3'- -ACUGC----AAGUGG-GAGGGU-UGG--CGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.