miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 238402 0.66 0.988277
Target:  5'- gGGCGUcCcagcgggGCCgCUCCCAguGCuCGCGGUCg -3'
miRNA:   3'- aCUGCAaG-------UGG-GAGGGU--UG-GCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 236378 0.66 0.990651
Target:  5'- cGuCGUUCuuCCUCCUAccgacguaccucuaACCGCGGUg -3'
miRNA:   3'- aCuGCAAGugGGAGGGU--------------UGGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 235907 0.7 0.912021
Target:  5'- cGGCGagggugCAcCCCUCCCAACugaaacaccaCGCGGUCg -3'
miRNA:   3'- aCUGCaa----GU-GGGAGGGUUG----------GCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 235767 0.67 0.974673
Target:  5'- cGGCGU--GCCC-CgCCGGCCGCGAc- -3'
miRNA:   3'- aCUGCAagUGGGaG-GGUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 233148 0.67 0.977146
Target:  5'- -cGCGUagcUCAUCCUCCagaucGCCGCGGUg -3'
miRNA:   3'- acUGCA---AGUGGGAGGgu---UGGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 232856 0.74 0.743895
Target:  5'- -cGCGgaC-CCCUCCCGGCCGCGAc- -3'
miRNA:   3'- acUGCaaGuGGGAGGGUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 224291 0.7 0.917801
Target:  5'- cGACGg-CGCCCgcCCCGACCGCc--- -3'
miRNA:   3'- aCUGCaaGUGGGa-GGGUUGGCGuuag -5'
13951 3' -53.3 NC_003521.1 + 224269 0.71 0.893293
Target:  5'- aGGCGcgCGCCCUcaCCCAGgUGCAcgCa -3'
miRNA:   3'- aCUGCaaGUGGGA--GGGUUgGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 222495 0.71 0.893293
Target:  5'- cGACugGUUcCugCggCCCAGCCGCGGUCa -3'
miRNA:   3'- aCUG--CAA-GugGgaGGGUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 217804 0.67 0.983502
Target:  5'- cGACGUgCACCgCUUCCugguCUGCAcgCg -3'
miRNA:   3'- aCUGCAaGUGG-GAGGGuu--GGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 216031 0.68 0.959337
Target:  5'- gUGACGUUCGCgCCcUUCAGCgGCAacgcGUCg -3'
miRNA:   3'- -ACUGCAAGUG-GGaGGGUUGgCGU----UAG- -5'
13951 3' -53.3 NC_003521.1 + 215934 0.66 0.99089
Target:  5'- cGGCGUucuggucgcgcuuUCGCUgCUCCCG-CCGCGAc- -3'
miRNA:   3'- aCUGCA-------------AGUGG-GAGGGUuGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 212082 0.66 0.992117
Target:  5'- aGACGgu--CCC-CCgGACCGCAAa- -3'
miRNA:   3'- aCUGCaaguGGGaGGgUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 211134 0.68 0.972009
Target:  5'- cGACGUaCACCCUgggCCCuacGCCGgUGGUCu -3'
miRNA:   3'- aCUGCAaGUGGGA---GGGu--UGGC-GUUAG- -5'
13951 3' -53.3 NC_003521.1 + 210173 0.66 0.98842
Target:  5'- aGACGUcUCccgagACCgUCCCGagagcacacuuACUGCGAUCa -3'
miRNA:   3'- aCUGCA-AG-----UGGgAGGGU-----------UGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 204050 0.73 0.78151
Target:  5'- -cGCGUg-GCCCUgCCAgucGCCGCAGUCg -3'
miRNA:   3'- acUGCAagUGGGAgGGU---UGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 202914 0.66 0.988277
Target:  5'- gGGCGUcCcagcgggGCCgCUCCCAguGCuCGCGGUCg -3'
miRNA:   3'- aCUGCAaG-------UGG-GAGGGU--UG-GCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 200165 0.7 0.917801
Target:  5'- --uCGUUUGCCCUCCUuacCCGCuGUCa -3'
miRNA:   3'- acuGCAAGUGGGAGGGuu-GGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 199444 0.68 0.96282
Target:  5'- -aACGUUCGCUUUCCUAACagaacaGCAAUa -3'
miRNA:   3'- acUGCAAGUGGGAGGGUUGg-----CGUUAg -5'
13951 3' -53.3 NC_003521.1 + 196372 0.66 0.98842
Target:  5'- gUGGCGUUgUACUCgcaucgCCgAGCCGCcGUCa -3'
miRNA:   3'- -ACUGCAA-GUGGGa-----GGgUUGGCGuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.