miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 196010 0.7 0.928659
Target:  5'- gUGGCGUgUCGCCCUCCgGccauCCGCucagcguuuGUCg -3'
miRNA:   3'- -ACUGCA-AGUGGGAGGgUu---GGCGu--------UAG- -5'
13951 3' -53.3 NC_003521.1 + 194493 0.67 0.980937
Target:  5'- cGACGacgCGCCCUCCUcgcacaagauGGCCGUcauagauucgcugcGAUCg -3'
miRNA:   3'- aCUGCaa-GUGGGAGGG----------UUGGCG--------------UUAG- -5'
13951 3' -53.3 NC_003521.1 + 192510 0.7 0.928659
Target:  5'- gUGACGgcuaacggcCACCCUCCCGcggcGCCG-GGUCg -3'
miRNA:   3'- -ACUGCaa-------GUGGGAGGGU----UGGCgUUAG- -5'
13951 3' -53.3 NC_003521.1 + 192109 0.67 0.974673
Target:  5'- cGGCGUcucCACCuCUCCCGGCCuC-GUCg -3'
miRNA:   3'- aCUGCAa--GUGG-GAGGGUUGGcGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 189974 0.66 0.986928
Target:  5'- gGAccCGUcCACCUUCUCAaaaaGCCGCcGUCa -3'
miRNA:   3'- aCU--GCAaGUGGGAGGGU----UGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 187649 0.71 0.899764
Target:  5'- cGACGgcgUCGCcgaCCUCCUcGCCGCcGUCc -3'
miRNA:   3'- aCUGCa--AGUG---GGAGGGuUGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 181707 0.68 0.96282
Target:  5'- aUGACGUUUucCCCUCCCuuuACaGCAcacacGUCa -3'
miRNA:   3'- -ACUGCAAGu-GGGAGGGu--UGgCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 179966 0.66 0.988979
Target:  5'- aUGACGUucugggggucuuuguUCAUgCUCUCGcggGCCGCcGUCg -3'
miRNA:   3'- -ACUGCA---------------AGUGgGAGGGU---UGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 178706 0.68 0.973098
Target:  5'- uUGACGUUCACCCaggCCaaCAACCagaccuacagcuacuGCAcgCa -3'
miRNA:   3'- -ACUGCAAGUGGGa--GG--GUUGG---------------CGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 171044 0.7 0.912021
Target:  5'- aGAUGUUCACCCccggCUCGcCCGUccGAUCa -3'
miRNA:   3'- aCUGCAAGUGGGa---GGGUuGGCG--UUAG- -5'
13951 3' -53.3 NC_003521.1 + 165273 0.67 0.983502
Target:  5'- cGGCGaUCGCggCCUCCUcGCUGgGAUCg -3'
miRNA:   3'- aCUGCaAGUG--GGAGGGuUGGCgUUAG- -5'
13951 3' -53.3 NC_003521.1 + 165019 0.66 0.986928
Target:  5'- ---gGUUCGCCCgg-CGACCGCGAUg -3'
miRNA:   3'- acugCAAGUGGGaggGUUGGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 164987 0.67 0.981554
Target:  5'- gGACGgacuggagaUCAUCgaUCCCAgcgaggagGCCGCGAUCg -3'
miRNA:   3'- aCUGCa--------AGUGGg-AGGGU--------UGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 162572 0.68 0.966089
Target:  5'- cGACGggcuucagCGCUCUgCCGGCUGCGGUg -3'
miRNA:   3'- aCUGCaa------GUGGGAgGGUUGGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 160776 0.66 0.98842
Target:  5'- aGGCugcCGCCCccuccUCCC-GCCGCGGUCu -3'
miRNA:   3'- aCUGcaaGUGGG-----AGGGuUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 156035 0.68 0.96915
Target:  5'- cGACGU--GCCCUCCCu-CUGCu-UCg -3'
miRNA:   3'- aCUGCAagUGGGAGGGuuGGCGuuAG- -5'
13951 3' -53.3 NC_003521.1 + 151512 0.67 0.974673
Target:  5'- cGuCG-UCGCCgUCCCAgGCCGCGGa- -3'
miRNA:   3'- aCuGCaAGUGGgAGGGU-UGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 150911 0.66 0.986452
Target:  5'- cGACuGcgCGCCCUUCCAcggcgugugggccgAgCGCGGUCa -3'
miRNA:   3'- aCUG-CaaGUGGGAGGGU--------------UgGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 141082 0.66 0.986928
Target:  5'- cGACGUggagGCCCUCCUguGGCUGCu--- -3'
miRNA:   3'- aCUGCAag--UGGGAGGG--UUGGCGuuag -5'
13951 3' -53.3 NC_003521.1 + 140757 0.74 0.734228
Target:  5'- gUGACGcgggCGCCUUCCuCAACCGCGGc- -3'
miRNA:   3'- -ACUGCaa--GUGGGAGG-GUUGGCGUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.