miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 5' -60.2 NC_003521.1 + 112374 0.67 0.737787
Target:  5'- ---gGCUGCGGCGUCUcGu-CCACCu -3'
miRNA:   3'- aagaCGACGCCGCAGGuCcuGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 136974 0.67 0.747116
Target:  5'- -gCUGCcaguccucgGCGGCGUCCugcucGGGcCCGCCc -3'
miRNA:   3'- aaGACGa--------CGCCGCAGG-----UCCuGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 3663 0.67 0.756353
Target:  5'- gUCUGCcuCGGCGgCCGGGACCcUCGu -3'
miRNA:   3'- aAGACGacGCCGCaGGUCCUGGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 116828 0.67 0.76458
Target:  5'- -gCUGCaGCGGUuUCCAGaccugacGGCCGCCGa -3'
miRNA:   3'- aaGACGaCGCCGcAGGUC-------CUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 224366 0.67 0.765489
Target:  5'- --aUGC-GCGGCGagUUCGGcGACCGCCGg -3'
miRNA:   3'- aagACGaCGCCGC--AGGUC-CUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 222423 0.66 0.774515
Target:  5'- -cCUGCUGgccacgggGGCGcUgCAGGACCAUCAu -3'
miRNA:   3'- aaGACGACg-------CCGC-AgGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 64623 0.66 0.774515
Target:  5'- cUCggGCaUGUccagGGCGcCCAGGGCCugCAg -3'
miRNA:   3'- aAGa-CG-ACG----CCGCaGGUCCUGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 114965 0.66 0.774515
Target:  5'- -gCUGCUGCGGCGUCagucGCCugUu -3'
miRNA:   3'- aaGACGACGCCGCAGguccUGGugGu -5'
13952 5' -60.2 NC_003521.1 + 40752 0.66 0.774515
Target:  5'- ---cGCUGCGGCG-CCGuGGCgCGCCGc -3'
miRNA:   3'- aagaCGACGCCGCaGGUcCUG-GUGGU- -5'
13952 5' -60.2 NC_003521.1 + 73555 0.66 0.783424
Target:  5'- gUCUGCU-CGGCGUCCu--GCCGCa- -3'
miRNA:   3'- aAGACGAcGCCGCAGGuccUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 63288 0.66 0.783424
Target:  5'- gUCcGCUGgugGGCGUCguGGgcGCCGCCGg -3'
miRNA:   3'- aAGaCGACg--CCGCAGguCC--UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 118056 0.66 0.783424
Target:  5'- -gCUGCuucUGaCGGUGUCCGccGCCACCAu -3'
miRNA:   3'- aaGACG---AC-GCCGCAGGUccUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 79669 0.66 0.792208
Target:  5'- -aCUGUUGCGaacgaCGUCCGcGACCGCCc -3'
miRNA:   3'- aaGACGACGCc----GCAGGUcCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 108950 0.66 0.792208
Target:  5'- -gCUGUcgGUGGCGUCUAuGACCACg- -3'
miRNA:   3'- aaGACGa-CGCCGCAGGUcCUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 120990 0.66 0.792208
Target:  5'- --gUGCcccugGUGGCcacgGUCCAGGGCCACa- -3'
miRNA:   3'- aagACGa----CGCCG----CAGGUCCUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 52798 0.66 0.792208
Target:  5'- ---cGgUGCGGC-UCCAccuGGACCGCCu -3'
miRNA:   3'- aagaCgACGCCGcAGGU---CCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 140479 0.66 0.795685
Target:  5'- aUCaUGCUGCacGGCGacucggccgccaagaUCCAGGAgCGCUAu -3'
miRNA:   3'- aAG-ACGACG--CCGC---------------AGGUCCUgGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 30425 0.66 0.800001
Target:  5'- ---cGCUGCGGUcccagcugaacauGUCCAGG-CgGCCGa -3'
miRNA:   3'- aagaCGACGCCG-------------CAGGUCCuGgUGGU- -5'
13952 5' -60.2 NC_003521.1 + 188783 0.66 0.80086
Target:  5'- -gCUGCUGCu-CGUCUGGGuccCCGCCAc -3'
miRNA:   3'- aaGACGACGccGCAGGUCCu--GGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 87760 0.66 0.80086
Target:  5'- -gCUGCggacagGUGGCGcaggCCAGGGCCAg-- -3'
miRNA:   3'- aaGACGa-----CGCCGCa---GGUCCUGGUggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.