Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13952 | 5' | -60.2 | NC_003521.1 | + | 20188 | 1.06 | 0.002725 |
Target: 5'- cUUCUGCUGCGGCGUCCAGGACCACCAg -3' miRNA: 3'- -AAGACGACGCCGCAGGUCCUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 192741 | 0.75 | 0.303512 |
Target: 5'- uUUCUuuuuCUGCGGCGUCCGcGGGCCGuCCAu -3' miRNA: 3'- -AAGAc---GACGCCGCAGGU-CCUGGU-GGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 53507 | 0.75 | 0.310297 |
Target: 5'- -gCUGCUGCGGCGUCgCAGcGGCCGa-- -3' miRNA: 3'- aaGACGACGCCGCAG-GUC-CUGGUggu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 164548 | 0.73 | 0.384433 |
Target: 5'- -gCUGCUGCGGUggcuGUCCAGGAgCGgCGg -3' miRNA: 3'- aaGACGACGCCG----CAGGUCCUgGUgGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 223859 | 0.73 | 0.392463 |
Target: 5'- -gCUGCUGCGGCuGUCCcucGGGuACCACg- -3' miRNA: 3'- aaGACGACGCCG-CAGG---UCC-UGGUGgu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 59635 | 0.72 | 0.442864 |
Target: 5'- -gCUGC-GCGGCGUCCAGcGGCUggcgcGCCGc -3' miRNA: 3'- aaGACGaCGCCGCAGGUC-CUGG-----UGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 233061 | 0.72 | 0.451615 |
Target: 5'- ---cGuCUGCGGCGUCUgcuGGGACUGCCGc -3' miRNA: 3'- aagaC-GACGCCGCAGG---UCCUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 127279 | 0.71 | 0.524728 |
Target: 5'- ---cGCgGCGGCGUCguCGGGcACCGCCAc -3' miRNA: 3'- aagaCGaCGCCGCAG--GUCC-UGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 117503 | 0.71 | 0.51532 |
Target: 5'- ---gGCgGCGGCG-CCGGGAgCCGCCGc -3' miRNA: 3'- aagaCGaCGCCGCaGGUCCU-GGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 57275 | 0.71 | 0.505981 |
Target: 5'- aUCcGCgugGCGGCGUCCGuGACCGCg- -3' miRNA: 3'- aAGaCGa--CGCCGCAGGUcCUGGUGgu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 59887 | 0.71 | 0.487526 |
Target: 5'- -cCUGCgagccGCGGuCGccgCCGGGGCCGCCGc -3' miRNA: 3'- aaGACGa----CGCC-GCa--GGUCCUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 151327 | 0.7 | 0.543734 |
Target: 5'- ---gGCggGUGGCGUCCgAGGGCCugCGc -3' miRNA: 3'- aagaCGa-CGCCGCAGG-UCCUGGugGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 71169 | 0.69 | 0.631335 |
Target: 5'- cUCUGCcucuuCGGCGUCCuccAGGuCCACCu -3' miRNA: 3'- aAGACGac---GCCGCAGG---UCCuGGUGGu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 118936 | 0.69 | 0.601896 |
Target: 5'- ---gGCgGCGGCGUCCcgucAGGGCCAgCGc -3' miRNA: 3'- aagaCGaCGCCGCAGG----UCCUGGUgGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 142774 | 0.69 | 0.611697 |
Target: 5'- gUCcGCgGCGGCGUCguCGGuGCCACCAa -3' miRNA: 3'- aAGaCGaCGCCGCAG--GUCcUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 53396 | 0.69 | 0.630353 |
Target: 5'- cUUCUGCagcuccuUGCgGGCGUCgGGcGCCACCGa -3' miRNA: 3'- -AAGACG-------ACG-CCGCAGgUCcUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 144098 | 0.69 | 0.621512 |
Target: 5'- cUUCUGCcucaUGCGGC-UgCuGGACCGCCGc -3' miRNA: 3'- -AAGACG----ACGCCGcAgGuCCUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 39038 | 0.69 | 0.621512 |
Target: 5'- -aUUGCUG-GGCGUCUGGGugC-CCAg -3' miRNA: 3'- aaGACGACgCCGCAGGUCCugGuGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 218030 | 0.69 | 0.641159 |
Target: 5'- gUUCUuggGCggcgGCGGCGUCCgcagguagaugAGGuCCACCGu -3' miRNA: 3'- -AAGA---CGa---CGCCGCAGG-----------UCCuGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 119768 | 0.69 | 0.641159 |
Target: 5'- aUCUGCU-CGGCcUCCAGGcugcgguCCACCu -3' miRNA: 3'- aAGACGAcGCCGcAGGUCCu------GGUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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