miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 5' -60.2 NC_003521.1 + 73072 0.67 0.737787
Target:  5'- -gCUGCUGCugguggugguaGGCGUgCGGGucuuggagcuguGCCGCCGa -3'
miRNA:   3'- aaGACGACG-----------CCGCAgGUCC------------UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 76253 0.67 0.718881
Target:  5'- --gUGCUGaCGGCGcCCggcgAGGGCCGCUc -3'
miRNA:   3'- aagACGAC-GCCGCaGG----UCCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 174954 0.68 0.699702
Target:  5'- ---gGCUGCaGUGUCUgaAGGACCugCAu -3'
miRNA:   3'- aagaCGACGcCGCAGG--UCCUGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 226977 0.66 0.817732
Target:  5'- ---cGCUGCcuGUGUCUGGGuCCGCCGa -3'
miRNA:   3'- aagaCGACGc-CGCAGGUCCuGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 63288 0.66 0.783424
Target:  5'- gUCcGCUGgugGGCGUCguGGgcGCCGCCGg -3'
miRNA:   3'- aAGaCGACg--CCGCAGguCC--UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 122930 0.67 0.737787
Target:  5'- --gUGCUG-GGCGccucgaucgcgcUCCAGGACCugCu -3'
miRNA:   3'- aagACGACgCCGC------------AGGUCCUGGugGu -5'
13952 5' -60.2 NC_003521.1 + 226636 0.68 0.69003
Target:  5'- -cCUGCgGCGGCGUCa---GCCGCCGc -3'
miRNA:   3'- aaGACGaCGCCGCAGguccUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 73555 0.66 0.783424
Target:  5'- gUCUGCU-CGGCGUCCu--GCCGCa- -3'
miRNA:   3'- aAGACGAcGCCGCAGGuccUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 218765 0.68 0.687119
Target:  5'- -cCUGCUGgccUGGUucgccuuucccgacGUCCGGGGCCACUg -3'
miRNA:   3'- aaGACGAC---GCCG--------------CAGGUCCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 136974 0.67 0.747116
Target:  5'- -gCUGCcaguccucgGCGGCGUCCugcucGGGcCCGCCc -3'
miRNA:   3'- aaGACGa--------CGCCGCAGG-----UCCuGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 64623 0.66 0.774515
Target:  5'- cUCggGCaUGUccagGGCGcCCAGGGCCugCAg -3'
miRNA:   3'- aAGa-CG-ACG----CCGCaGGUCCUGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 131222 0.68 0.660779
Target:  5'- ---cGUgacggGCGGCGg-CGGGGCCACCAg -3'
miRNA:   3'- aagaCGa----CGCCGCagGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 43713 0.67 0.718881
Target:  5'- ---cGCUGUGaGaguUCCAGGGCCGCCGc -3'
miRNA:   3'- aagaCGACGC-Cgc-AGGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 120990 0.66 0.792208
Target:  5'- --gUGCcccugGUGGCcacgGUCCAGGGCCACa- -3'
miRNA:   3'- aagACGa----CGCCG----CAGGUCCUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 66590 0.66 0.80937
Target:  5'- -gCUGCcagGCGGCcUCCAcggcuuGGAUCACCu -3'
miRNA:   3'- aaGACGa--CGCCGcAGGU------CCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 57170 0.66 0.817732
Target:  5'- --gUGCUGCGGCGcugUCGcGACgGCCAg -3'
miRNA:   3'- aagACGACGCCGCa--GGUcCUGgUGGU- -5'
13952 5' -60.2 NC_003521.1 + 181229 0.67 0.718881
Target:  5'- ---aGCUGCaGGUGgagaUCCAGGACC-CCGc -3'
miRNA:   3'- aagaCGACG-CCGC----AGGUCCUGGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 164795 0.67 0.718881
Target:  5'- -gCUGCUGCGa-GUCCGGGuCCGgCAg -3'
miRNA:   3'- aaGACGACGCcgCAGGUCCuGGUgGU- -5'
13952 5' -60.2 NC_003521.1 + 169705 0.68 0.660779
Target:  5'- aUCUGCauagucGUGGCGUUCAGGugCGuCCc -3'
miRNA:   3'- aAGACGa-----CGCCGCAGGUCCugGU-GGu -5'
13952 5' -60.2 NC_003521.1 + 87760 0.66 0.80086
Target:  5'- -gCUGCggacagGUGGCGcaggCCAGGGCCAg-- -3'
miRNA:   3'- aaGACGa-----CGCCGCa---GGUCCUGGUggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.