miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 5' -60.2 NC_003521.1 + 20188 1.06 0.002725
Target:  5'- cUUCUGCUGCGGCGUCCAGGACCACCAg -3'
miRNA:   3'- -AAGACGACGCCGCAGGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 76253 0.67 0.718881
Target:  5'- --gUGCUGaCGGCGcCCggcgAGGGCCGCUc -3'
miRNA:   3'- aagACGAC-GCCGCaGG----UCCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 73072 0.67 0.737787
Target:  5'- -gCUGCUGCugguggugguaGGCGUgCGGGucuuggagcuguGCCGCCGa -3'
miRNA:   3'- aaGACGACG-----------CCGCAgGUCC------------UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 219473 0.66 0.821034
Target:  5'- cUCUGCUGCcuGGCGaCCgccaucaugggccugGGGcucaGCCGCCAc -3'
miRNA:   3'- aAGACGACG--CCGCaGG---------------UCC----UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 57275 0.71 0.505981
Target:  5'- aUCcGCgugGCGGCGUCCGuGACCGCg- -3'
miRNA:   3'- aAGaCGa--CGCCGCAGGUcCUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 117503 0.71 0.51532
Target:  5'- ---gGCgGCGGCG-CCGGGAgCCGCCGc -3'
miRNA:   3'- aagaCGaCGCCGCaGGUCCU-GGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 144766 0.69 0.601896
Target:  5'- aUCUGCcgacaGuCGGCGUCCAGGuCCuCCu -3'
miRNA:   3'- aAGACGa----C-GCCGCAGGUCCuGGuGGu -5'
13952 5' -60.2 NC_003521.1 + 102704 0.69 0.640177
Target:  5'- aUCUGCcgcggccUGCGGCGcgUCuGGAUCGCCGu -3'
miRNA:   3'- aAGACG-------ACGCCGCa-GGuCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 131222 0.68 0.660779
Target:  5'- ---cGUgacggGCGGCGg-CGGGGCCACCAg -3'
miRNA:   3'- aagaCGa----CGCCGCagGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 181229 0.67 0.718881
Target:  5'- ---aGCUGCaGGUGgagaUCCAGGACC-CCGc -3'
miRNA:   3'- aagaCGACG-CCGC----AGGUCCUGGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 226636 0.68 0.69003
Target:  5'- -cCUGCgGCGGCGUCa---GCCGCCGc -3'
miRNA:   3'- aaGACGaCGCCGCAGguccUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 62313 0.69 0.650975
Target:  5'- cUUCaugGUUGCGGCGUCCgcGGGACgGgCGa -3'
miRNA:   3'- -AAGa--CGACGCCGCAGG--UCCUGgUgGU- -5'
13952 5' -60.2 NC_003521.1 + 164548 0.73 0.384433
Target:  5'- -gCUGCUGCGGUggcuGUCCAGGAgCGgCGg -3'
miRNA:   3'- aaGACGACGCCG----CAGGUCCUgGUgGU- -5'
13952 5' -60.2 NC_003521.1 + 174954 0.68 0.699702
Target:  5'- ---gGCUGCaGUGUCUgaAGGACCugCAu -3'
miRNA:   3'- aagaCGACGcCGCAGG--UCCUGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 59635 0.72 0.442864
Target:  5'- -gCUGC-GCGGCGUCCAGcGGCUggcgcGCCGc -3'
miRNA:   3'- aaGACGaCGCCGCAGGUC-CUGG-----UGGU- -5'
13952 5' -60.2 NC_003521.1 + 227220 0.69 0.641159
Target:  5'- cUCUGCggGCGGCGccgCCAuGGAuuUCGCCGg -3'
miRNA:   3'- aAGACGa-CGCCGCa--GGU-CCU--GGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 164795 0.67 0.718881
Target:  5'- -gCUGCUGCGa-GUCCGGGuCCGgCAg -3'
miRNA:   3'- aaGACGACGCcgCAGGUCCuGGUgGU- -5'
13952 5' -60.2 NC_003521.1 + 43713 0.67 0.718881
Target:  5'- ---cGCUGUGaGaguUCCAGGGCCGCCGc -3'
miRNA:   3'- aagaCGACGC-Cgc-AGGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 59887 0.71 0.487526
Target:  5'- -cCUGCgagccGCGGuCGccgCCGGGGCCGCCGc -3'
miRNA:   3'- aaGACGa----CGCC-GCa--GGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 127279 0.71 0.524728
Target:  5'- ---cGCgGCGGCGUCguCGGGcACCGCCAc -3'
miRNA:   3'- aagaCGaCGCCGCAG--GUCC-UGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.