Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13953 | 3' | -48.2 | NC_003521.1 | + | 211623 | 0.66 | 0.999964 |
Target: 5'- aCGUGAUGUUcGUGAAGu-CGUUUCa -3' miRNA: 3'- gGCACUACGGcUACUUCcuGUAAAGa -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 225246 | 0.66 | 0.999973 |
Target: 5'- gCGUGGUGCUGGUGGGcGACcg--CUa -3' miRNA: 3'- gGCACUACGGCUACUUcCUGuaaaGA- -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 30340 | 0.66 | 0.999936 |
Target: 5'- aCCGUGAgcgGCCGgcG-GGGACGg---- -3' miRNA: 3'- -GGCACUa--CGGCuaCuUCCUGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 111614 | 0.66 | 0.999936 |
Target: 5'- gCCGgGAU-CCGAggaGAAGGACAUggCg -3' miRNA: 3'- -GGCaCUAcGGCUa--CUUCCUGUAaaGa -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 175411 | 0.66 | 0.999936 |
Target: 5'- gUGUGAUGagaaccCCGG-GAAGGACAU-UCUg -3' miRNA: 3'- gGCACUAC------GGCUaCUUCCUGUAaAGA- -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 148940 | 0.66 | 0.999936 |
Target: 5'- gCCGUGcuggcgcguGUGCUGcUGGAGGGCAg---- -3' miRNA: 3'- -GGCAC---------UACGGCuACUUCCUGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 29385 | 0.66 | 0.999936 |
Target: 5'- aCCGcGAgGCCGA-GGAGGACGa---- -3' miRNA: 3'- -GGCaCUaCGGCUaCUUCCUGUaaaga -5' |
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13953 | 3' | -48.2 | NC_003521.1 | + | 197132 | 0.66 | 0.999973 |
Target: 5'- cCCGcGGUGCCGuugcUGGAGGugGa---- -3' miRNA: 3'- -GGCaCUACGGCu---ACUUCCugUaaaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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