Results 1 - 20 of 191 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 59070 | 0.7 | 0.561527 |
Target: 5'- gUUGUCCUcgucggccggaucgCGCGGCCGCUUGgC-CAGCg -3' miRNA: 3'- gGACAGGG--------------GCGCCGGCGGAC-GuGUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 219347 | 0.73 | 0.413537 |
Target: 5'- gCUUGUCCuuGUaGGCCGCCagcUGCACGc- -3' miRNA: 3'- -GGACAGGggCG-CCGGCGG---ACGUGUug -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 100266 | 0.72 | 0.43843 |
Target: 5'- gCUGUCgCCGCcGCCGCC-GCAgCAGCc -3' miRNA: 3'- gGACAGgGGCGcCGGCGGaCGU-GUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 150620 | 0.71 | 0.485297 |
Target: 5'- gCUGUUgCgGCGGCUGCUgcgcaggcgggggcgUGCGCGACg -3' miRNA: 3'- gGACAGgGgCGCCGGCGG---------------ACGUGUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 114920 | 0.71 | 0.488865 |
Target: 5'- aCgUGUCCCUcgaGCGGCUGCUggagagcugcucGCGCAGCg -3' miRNA: 3'- -GgACAGGGG---CGCCGGCGGa-----------CGUGUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 111480 | 0.71 | 0.516914 |
Target: 5'- gCCUuUCCCuccuuCGCGGCgcucaacCGCCUGCugGGCg -3' miRNA: 3'- -GGAcAGGG-----GCGCCG-------GCGGACGugUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 112778 | 0.7 | 0.554947 |
Target: 5'- gCCaUGUgCCUGCuGGCCGCCUacggGCACGc- -3' miRNA: 3'- -GG-ACAgGGGCG-CCGGCGGA----CGUGUug -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 234760 | 0.7 | 0.554947 |
Target: 5'- gCUGgcgugaucacgCCCUGCggGGCCGCUgggGCACGGCu -3' miRNA: 3'- gGACa----------GGGGCG--CCGGCGGa--CGUGUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 40481 | 0.7 | 0.554947 |
Target: 5'- -aUGUgUCCGCGGCgCGCCacgGCGCcGCa -3' miRNA: 3'- ggACAgGGGCGCCG-GCGGa--CGUGuUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 18977 | 0.73 | 0.405435 |
Target: 5'- cCCUGgugguggacgCCCacaGCGGCCaGCUguUGCACAACg -3' miRNA: 3'- -GGACa---------GGGg--CGCCGG-CGG--ACGUGUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 114502 | 0.73 | 0.405435 |
Target: 5'- gCUGUCCgUCGUGGCCGCCgUGCcCAc- -3' miRNA: 3'- gGACAGG-GGCGCCGGCGG-ACGuGUug -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 190983 | 0.73 | 0.389534 |
Target: 5'- aCCgccaCCUgGaCGGCCGUCUGCACGGCg -3' miRNA: 3'- -GGaca-GGGgC-GCCGGCGGACGUGUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 30248 | 0.77 | 0.248437 |
Target: 5'- --gGUCCgCGCGGuuGCCgugGCGCAGCu -3' miRNA: 3'- ggaCAGGgGCGCCggCGGa--CGUGUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 197257 | 0.76 | 0.265092 |
Target: 5'- cCCcGUCCCCccagucaGCGGCCGCCucUGuCGCGGCg -3' miRNA: 3'- -GGaCAGGGG-------CGCCGGCGG--AC-GUGUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 125996 | 0.75 | 0.309666 |
Target: 5'- uUCUGUCCgugcaCCGUGGCCGCCgcguUGCGCuccGACa -3' miRNA: 3'- -GGACAGG-----GGCGCCGGCGG----ACGUG---UUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 75821 | 0.74 | 0.328056 |
Target: 5'- aCCUGUCCuuGCGGCCGaUCUcGCccucgggaagauggGCGACa -3' miRNA: 3'- -GGACAGGggCGCCGGC-GGA-CG--------------UGUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 73600 | 0.74 | 0.337194 |
Target: 5'- aCCUGgcgCCCUacaccaagauGCGGCgCGCCUGC-CAGCc -3' miRNA: 3'- -GGACa--GGGG----------CGCCG-GCGGACGuGUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 105583 | 0.74 | 0.366462 |
Target: 5'- gCCgUGUCgUCGCcGCCGCCgGCGCAGCc -3' miRNA: 3'- -GG-ACAGgGGCGcCGGCGGaCGUGUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 30075 | 0.73 | 0.374048 |
Target: 5'- gCC-GUCCCCGcCGGCCGCUcacgGUAgCAGCg -3' miRNA: 3'- -GGaCAGGGGC-GCCGGCGGa---CGU-GUUG- -5' |
|||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 16882 | 0.73 | 0.387185 |
Target: 5'- ---uUCCCCGCGGCCGCCUcgacccccucggccGCGCc-- -3' miRNA: 3'- ggacAGGGGCGCCGGCGGA--------------CGUGuug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home