miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13960 3' -60.9 NC_003521.1 + 211440 0.66 0.821708
Target:  5'- cGUCGUCCuccucGGCcUCGCggucgGGGCAgGCCAu -3'
miRNA:   3'- -CAGCAGGu----CCGcGGCG-----UCUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 95824 0.66 0.821708
Target:  5'- uGUCGgcgcgCgAGGCcUCGguGGCAUGCCGc -3'
miRNA:   3'- -CAGCa----GgUCCGcGGCguCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 23569 0.66 0.821708
Target:  5'- cUCGUCCgucauggugguGGGCGCgGgGGuGCugGCCu -3'
miRNA:   3'- cAGCAGG-----------UCCGCGgCgUC-UGugCGGu -5'
13960 3' -60.9 NC_003521.1 + 72590 0.66 0.821708
Target:  5'- -gCGuUCCAGGCGCUcaAGAgCGCGCUg -3'
miRNA:   3'- caGC-AGGUCCGCGGcgUCU-GUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 78011 0.66 0.821708
Target:  5'- gGUCGUCCuuGCGCUGaccCAGAUACagcucgGCCAu -3'
miRNA:   3'- -CAGCAGGucCGCGGC---GUCUGUG------CGGU- -5'
13960 3' -60.9 NC_003521.1 + 99447 0.66 0.821708
Target:  5'- uGUCGUCauCGGGCaCCGCGucaccGAC-CGCCGc -3'
miRNA:   3'- -CAGCAG--GUCCGcGGCGU-----CUGuGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 162679 0.66 0.821708
Target:  5'- cUCGUUCGcGGcCGCCGCcGcuaACGCGCCc -3'
miRNA:   3'- cAGCAGGU-CC-GCGGCGuC---UGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 212654 0.66 0.821708
Target:  5'- -gCGaCCcgaagaGGGCGUCGCGGGCAugguCGCCGc -3'
miRNA:   3'- caGCaGG------UCCGCGGCGUCUGU----GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 126949 0.66 0.821708
Target:  5'- uGUCGcUguGcCGCCGCGGAaccCGCGCCGu -3'
miRNA:   3'- -CAGCaGguCcGCGGCGUCU---GUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 77506 0.66 0.8209
Target:  5'- --aGUgCCGcucGCGCCGCugaccguGGACACGCCGu -3'
miRNA:   3'- cagCA-GGUc--CGCGGCG-------UCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 18898 0.66 0.8209
Target:  5'- ----aCgAGGCGCCGCggcagccccgaagGGugGCGCCGc -3'
miRNA:   3'- cagcaGgUCCGCGGCG-------------UCugUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 16049 0.66 0.813564
Target:  5'- cGUgGUgCGGGCGCUGCuGcACAacUGCCGg -3'
miRNA:   3'- -CAgCAgGUCCGCGGCGuC-UGU--GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 35472 0.66 0.813564
Target:  5'- gGUCGUgCAcGGCgcagcugccGCCGCcgaGGAgGCGCCGu -3'
miRNA:   3'- -CAGCAgGU-CCG---------CGGCG---UCUgUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 125097 0.66 0.813564
Target:  5'- --gGUgCAGGCGCUGCGGGaugggcacCACgGCCGc -3'
miRNA:   3'- cagCAgGUCCGCGGCGUCU--------GUG-CGGU- -5'
13960 3' -60.9 NC_003521.1 + 85320 0.66 0.813564
Target:  5'- cGUCGcUCCAgccuuggcccgcGGCccGCCGCAGGCcgGCGUCu -3'
miRNA:   3'- -CAGC-AGGU------------CCG--CGGCGUCUG--UGCGGu -5'
13960 3' -60.9 NC_003521.1 + 103858 0.66 0.813564
Target:  5'- cUCGUCCAGGC-UgGC-GAUcaGCGCCGa -3'
miRNA:   3'- cAGCAGGUCCGcGgCGuCUG--UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 102294 0.66 0.813564
Target:  5'- cUCGUCCccgucguaguAGGCGuCCGCGG-CAuCGUCGu -3'
miRNA:   3'- cAGCAGG----------UCCGC-GGCGUCuGU-GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 228104 0.66 0.813564
Target:  5'- cUCGUCCAGGCuGuuGC--GCGCGUa- -3'
miRNA:   3'- cAGCAGGUCCG-CggCGucUGUGCGgu -5'
13960 3' -60.9 NC_003521.1 + 86814 0.66 0.813564
Target:  5'- ----aCCAGGUGCUGCGGACcCGUg- -3'
miRNA:   3'- cagcaGGUCCGCGGCGUCUGuGCGgu -5'
13960 3' -60.9 NC_003521.1 + 175049 0.66 0.813564
Target:  5'- aGUUGUCC-GGCGgCGguGugAUGCg- -3'
miRNA:   3'- -CAGCAGGuCCGCgGCguCugUGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.