Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13964 | 3' | -57.9 | NC_003521.1 | + | 132430 | 0.66 | 0.942958 |
Target: 5'- -aCACGGGGUCGGGuuagCGUGCGGCGc -3' miRNA: 3'- ggGUGCUCCAGCCUcca-GUGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 174208 | 0.66 | 0.938571 |
Target: 5'- gCCCACGuugGGGUCGcGcGGGUCgggcagggGCGCGuCGg -3' miRNA: 3'- -GGGUGC---UCCAGC-C-UCCAG--------UGCGCuGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 211337 | 0.66 | 0.938571 |
Target: 5'- uCCCGCGGgcgcgaguGGUUGG-GGUCcCGCaGCAg -3' miRNA: 3'- -GGGUGCU--------CCAGCCuCCAGuGCGcUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 76303 | 0.66 | 0.938571 |
Target: 5'- gUCCGgGuccGGcagCGGAGGUgGCgGCGACAg -3' miRNA: 3'- -GGGUgCu--CCa--GCCUCCAgUG-CGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 195412 | 0.66 | 0.938571 |
Target: 5'- gCCgAgGAGGU-GGAGGcCACGgcCGACGa -3' miRNA: 3'- -GGgUgCUCCAgCCUCCaGUGC--GCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 60692 | 0.66 | 0.938571 |
Target: 5'- gCCgCGCGGGGgaccCGGGGGcgGCGCGGg- -3' miRNA: 3'- -GG-GUGCUCCa---GCCUCCagUGCGCUgu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 46441 | 0.66 | 0.938571 |
Target: 5'- uCCgGCGGGGcugCGGGGG-CugGuCGGCc -3' miRNA: 3'- -GGgUGCUCCa--GCCUCCaGugC-GCUGu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 110617 | 0.66 | 0.935838 |
Target: 5'- aCCAUGAGGUaggGGuagucguccaugugcAGGcugagaUCGCGCGGCAg -3' miRNA: 3'- gGGUGCUCCAg--CC---------------UCC------AGUGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 46392 | 0.66 | 0.933974 |
Target: 5'- -gCGCGGGGUgCGuGGGG-CGCGCGGg- -3' miRNA: 3'- ggGUGCUCCA-GC-CUCCaGUGCGCUgu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 103215 | 0.66 | 0.933974 |
Target: 5'- aCCUggAUGAGGUCGccGGcCAgGCGGCGg -3' miRNA: 3'- -GGG--UGCUCCAGCcuCCaGUgCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 188667 | 0.66 | 0.932554 |
Target: 5'- aCCCGCGguaccgucgcugacGGG-CGGGGGaUACGCGGg- -3' miRNA: 3'- -GGGUGC--------------UCCaGCCUCCaGUGCGCUgu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 175847 | 0.66 | 0.929165 |
Target: 5'- gCgCACGucGUCGugcGAGGUCAC-CGGCAg -3' miRNA: 3'- -GgGUGCucCAGC---CUCCAGUGcGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 141355 | 0.66 | 0.929165 |
Target: 5'- uCCCACGGGuGcggCGGcGGUCG-GUGACGc -3' miRNA: 3'- -GGGUGCUC-Ca--GCCuCCAGUgCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 172568 | 0.66 | 0.929165 |
Target: 5'- gUCC-CGGGGUCGGcGGUCGCacCGcCAg -3' miRNA: 3'- -GGGuGCUCCAGCCuCCAGUGc-GCuGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 18777 | 0.66 | 0.928673 |
Target: 5'- aCCACGcAGGcggUGGAGGgccagcgcugcuuUCGCGUGGCc -3' miRNA: 3'- gGGUGC-UCCa--GCCUCC-------------AGUGCGCUGu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 175395 | 0.66 | 0.928673 |
Target: 5'- aCCCAUGAcccggcgcaggugGGUCagGGAGG-CGCGCGuCu -3' miRNA: 3'- -GGGUGCU-------------CCAG--CCUCCaGUGCGCuGu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 170052 | 0.66 | 0.924144 |
Target: 5'- gCCAUGAGGUUGGcguucccGGUCGCGUu--- -3' miRNA: 3'- gGGUGCUCCAGCCu------CCAGUGCGcugu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 223489 | 0.66 | 0.924144 |
Target: 5'- gCCCGgGAGGUgGGGcGGaUCG-GCGACu -3' miRNA: 3'- -GGGUgCUCCAgCCU-CC-AGUgCGCUGu -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 7962 | 0.66 | 0.924144 |
Target: 5'- gCCGCGGugucgcGGcCGGgaGGGUC-CGCGGCGg -3' miRNA: 3'- gGGUGCU------CCaGCC--UCCAGuGCGCUGU- -5' |
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13964 | 3' | -57.9 | NC_003521.1 | + | 104980 | 0.67 | 0.918911 |
Target: 5'- gCCGCGAGacGUCGGAGGagucuucuUCGCuGCuGCAg -3' miRNA: 3'- gGGUGCUC--CAGCCUCC--------AGUG-CGcUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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