miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 3' -57.9 NC_003521.1 + 132430 0.66 0.942958
Target:  5'- -aCACGGGGUCGGGuuagCGUGCGGCGc -3'
miRNA:   3'- ggGUGCUCCAGCCUcca-GUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 211337 0.66 0.938571
Target:  5'- uCCCGCGGgcgcgaguGGUUGG-GGUCcCGCaGCAg -3'
miRNA:   3'- -GGGUGCU--------CCAGCCuCCAGuGCGcUGU- -5'
13964 3' -57.9 NC_003521.1 + 195412 0.66 0.938571
Target:  5'- gCCgAgGAGGU-GGAGGcCACGgcCGACGa -3'
miRNA:   3'- -GGgUgCUCCAgCCUCCaGUGC--GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 174208 0.66 0.938571
Target:  5'- gCCCACGuugGGGUCGcGcGGGUCgggcagggGCGCGuCGg -3'
miRNA:   3'- -GGGUGC---UCCAGC-C-UCCAG--------UGCGCuGU- -5'
13964 3' -57.9 NC_003521.1 + 60692 0.66 0.938571
Target:  5'- gCCgCGCGGGGgaccCGGGGGcgGCGCGGg- -3'
miRNA:   3'- -GG-GUGCUCCa---GCCUCCagUGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 46441 0.66 0.938571
Target:  5'- uCCgGCGGGGcugCGGGGG-CugGuCGGCc -3'
miRNA:   3'- -GGgUGCUCCa--GCCUCCaGugC-GCUGu -5'
13964 3' -57.9 NC_003521.1 + 76303 0.66 0.938571
Target:  5'- gUCCGgGuccGGcagCGGAGGUgGCgGCGACAg -3'
miRNA:   3'- -GGGUgCu--CCa--GCCUCCAgUG-CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 110617 0.66 0.935838
Target:  5'- aCCAUGAGGUaggGGuagucguccaugugcAGGcugagaUCGCGCGGCAg -3'
miRNA:   3'- gGGUGCUCCAg--CC---------------UCC------AGUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 103215 0.66 0.933974
Target:  5'- aCCUggAUGAGGUCGccGGcCAgGCGGCGg -3'
miRNA:   3'- -GGG--UGCUCCAGCcuCCaGUgCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 46392 0.66 0.933974
Target:  5'- -gCGCGGGGUgCGuGGGG-CGCGCGGg- -3'
miRNA:   3'- ggGUGCUCCA-GC-CUCCaGUGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 188667 0.66 0.932554
Target:  5'- aCCCGCGguaccgucgcugacGGG-CGGGGGaUACGCGGg- -3'
miRNA:   3'- -GGGUGC--------------UCCaGCCUCCaGUGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 175847 0.66 0.929165
Target:  5'- gCgCACGucGUCGugcGAGGUCAC-CGGCAg -3'
miRNA:   3'- -GgGUGCucCAGC---CUCCAGUGcGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 141355 0.66 0.929165
Target:  5'- uCCCACGGGuGcggCGGcGGUCG-GUGACGc -3'
miRNA:   3'- -GGGUGCUC-Ca--GCCuCCAGUgCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 172568 0.66 0.929165
Target:  5'- gUCC-CGGGGUCGGcGGUCGCacCGcCAg -3'
miRNA:   3'- -GGGuGCUCCAGCCuCCAGUGc-GCuGU- -5'
13964 3' -57.9 NC_003521.1 + 18777 0.66 0.928673
Target:  5'- aCCACGcAGGcggUGGAGGgccagcgcugcuuUCGCGUGGCc -3'
miRNA:   3'- gGGUGC-UCCa--GCCUCC-------------AGUGCGCUGu -5'
13964 3' -57.9 NC_003521.1 + 175395 0.66 0.928673
Target:  5'- aCCCAUGAcccggcgcaggugGGUCagGGAGG-CGCGCGuCu -3'
miRNA:   3'- -GGGUGCU-------------CCAG--CCUCCaGUGCGCuGu -5'
13964 3' -57.9 NC_003521.1 + 7962 0.66 0.924144
Target:  5'- gCCGCGGugucgcGGcCGGgaGGGUC-CGCGGCGg -3'
miRNA:   3'- gGGUGCU------CCaGCC--UCCAGuGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 223489 0.66 0.924144
Target:  5'- gCCCGgGAGGUgGGGcGGaUCG-GCGACu -3'
miRNA:   3'- -GGGUgCUCCAgCCU-CC-AGUgCGCUGu -5'
13964 3' -57.9 NC_003521.1 + 170052 0.66 0.924144
Target:  5'- gCCAUGAGGUUGGcguucccGGUCGCGUu--- -3'
miRNA:   3'- gGGUGCUCCAGCCu------CCAGUGCGcugu -5'
13964 3' -57.9 NC_003521.1 + 86269 0.67 0.918911
Target:  5'- gCCgGCGAGGcgaagUUGGGGGUgGCGCccaACAc -3'
miRNA:   3'- -GGgUGCUCC-----AGCCUCCAgUGCGc--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.