miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 3' -57.9 NC_003521.1 + 180561 0.69 0.840273
Target:  5'- cCCCACcAGGUCGuGGGcCACGuCGAUc -3'
miRNA:   3'- -GGGUGcUCCAGCcUCCaGUGC-GCUGu -5'
13964 3' -57.9 NC_003521.1 + 175847 0.66 0.929165
Target:  5'- gCgCACGucGUCGugcGAGGUCAC-CGGCAg -3'
miRNA:   3'- -GgGUGCucCAGC---CUCCAGUGcGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 175395 0.66 0.928673
Target:  5'- aCCCAUGAcccggcgcaggugGGUCagGGAGG-CGCGCGuCu -3'
miRNA:   3'- -GGGUGCU-------------CCAG--CCUCCaGUGCGCuGu -5'
13964 3' -57.9 NC_003521.1 + 174208 0.66 0.938571
Target:  5'- gCCCACGuugGGGUCGcGcGGGUCgggcagggGCGCGuCGg -3'
miRNA:   3'- -GGGUGC---UCCAGC-C-UCCAG--------UGCGCuGU- -5'
13964 3' -57.9 NC_003521.1 + 172568 0.66 0.929165
Target:  5'- gUCC-CGGGGUCGGcGGUCGCacCGcCAg -3'
miRNA:   3'- -GGGuGCUCCAGCCuCCAGUGc-GCuGU- -5'
13964 3' -57.9 NC_003521.1 + 170866 0.68 0.869584
Target:  5'- cUCCGCGGGGgcgggcgCGGGuGGUCAgGCGuCc -3'
miRNA:   3'- -GGGUGCUCCa------GCCU-CCAGUgCGCuGu -5'
13964 3' -57.9 NC_003521.1 + 170052 0.66 0.924144
Target:  5'- gCCAUGAGGUUGGcguucccGGUCGCGUu--- -3'
miRNA:   3'- gGGUGCUCCAGCCu------CCAGUGCGcugu -5'
13964 3' -57.9 NC_003521.1 + 168061 0.71 0.700609
Target:  5'- gCCCGucuCGuGGUaGGAGGUagaGCGCGGCAc -3'
miRNA:   3'- -GGGU---GCuCCAgCCUCCAg--UGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 157041 0.71 0.710046
Target:  5'- --gGCGcGGUCGGAGGa-GCGCGGCGg -3'
miRNA:   3'- gggUGCuCCAGCCUCCagUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 156471 0.69 0.832511
Target:  5'- aUCCAgGAGG-CGGAGGagGCGCuGAgGg -3'
miRNA:   3'- -GGGUgCUCCaGCCUCCagUGCG-CUgU- -5'
13964 3' -57.9 NC_003521.1 + 152057 0.67 0.91291
Target:  5'- -aCGCGGGGuaucguggacuucUCGGAGGacCACGgCGACGu -3'
miRNA:   3'- ggGUGCUCC-------------AGCCUCCa-GUGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 150635 0.69 0.824587
Target:  5'- gCUGCGcAGG-CGGGGGcgUGCGCGACGa -3'
miRNA:   3'- gGGUGC-UCCaGCCUCCa-GUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 141355 0.66 0.929165
Target:  5'- uCCCACGGGuGcggCGGcGGUCG-GUGACGc -3'
miRNA:   3'- -GGGUGCUC-Ca--GCCuCCAGUgCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 135639 0.69 0.840273
Target:  5'- uCCCACGAucGG-CGGGGGgcccaGCGuCGGCGg -3'
miRNA:   3'- -GGGUGCU--CCaGCCUCCag---UGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 132430 0.66 0.942958
Target:  5'- -aCACGGGGUCGGGuuagCGUGCGGCGc -3'
miRNA:   3'- ggGUGCUCCAGCCUcca-GUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 126775 0.69 0.808281
Target:  5'- gCCACGuucaggcuGGUCgaGGAGGagaGCGCGACGg -3'
miRNA:   3'- gGGUGCu-------CCAG--CCUCCag-UGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 122578 0.67 0.889601
Target:  5'- gUCACGGGGcUCGGuuucucGGUCGC-CGGCGu -3'
miRNA:   3'- gGGUGCUCC-AGCCu-----CCAGUGcGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 119796 0.67 0.901947
Target:  5'- gCgACGAGGUCggcgccgccgaGGAGGUCuggagcaGCGGCu -3'
miRNA:   3'- gGgUGCUCCAG-----------CCUCCAGug-----CGCUGu -5'
13964 3' -57.9 NC_003521.1 + 114012 0.68 0.883125
Target:  5'- -aCGCGaAGGUgcUGGAGGUgCGCGCGGa- -3'
miRNA:   3'- ggGUGC-UCCA--GCCUCCA-GUGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 110617 0.66 0.935838
Target:  5'- aCCAUGAGGUaggGGuagucguccaugugcAGGcugagaUCGCGCGGCAg -3'
miRNA:   3'- gGGUGCUCCAg--CC---------------UCC------AGUGCGCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.