miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 3' -57.9 NC_003521.1 + 204226 0.67 0.889601
Target:  5'- gCCCGCccuuggugaucaGGGGcUGGAGGaUCACGgGACu -3'
miRNA:   3'- -GGGUG------------CUCCaGCCUCC-AGUGCgCUGu -5'
13964 3' -57.9 NC_003521.1 + 229240 0.68 0.883125
Target:  5'- aCCCGCGGGccgCGGAGGUgCuuGCGGu- -3'
miRNA:   3'- -GGGUGCUCca-GCCUCCA-GugCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 180561 0.69 0.840273
Target:  5'- cCCCACcAGGUCGuGGGcCACGuCGAUc -3'
miRNA:   3'- -GGGUGcUCCAGCcUCCaGUGC-GCUGu -5'
13964 3' -57.9 NC_003521.1 + 126775 0.69 0.808281
Target:  5'- gCCACGuucaggcuGGUCgaGGAGGagaGCGCGACGg -3'
miRNA:   3'- gGGUGCu-------CCAG--CCUCCag-UGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 7962 0.66 0.924144
Target:  5'- gCCGCGGugucgcGGcCGGgaGGGUC-CGCGGCGg -3'
miRNA:   3'- gGGUGCU------CCaGCC--UCCAGuGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 38194 0.67 0.901947
Target:  5'- uCCCAgugcucgcgguCGAGGUCGGgcAGGagGCGCagGGCGg -3'
miRNA:   3'- -GGGU-----------GCUCCAGCC--UCCagUGCG--CUGU- -5'
13964 3' -57.9 NC_003521.1 + 114012 0.68 0.883125
Target:  5'- -aCGCGaAGGUgcUGGAGGUgCGCGCGGa- -3'
miRNA:   3'- ggGUGC-UCCA--GCCUCCA-GUGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 49607 0.69 0.808281
Target:  5'- aCCgGCGcuGGGgacgCGGAGGaCACgGCGACGa -3'
miRNA:   3'- -GGgUGC--UCCa---GCCUCCaGUG-CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 119796 0.67 0.901947
Target:  5'- gCgACGAGGUCggcgccgccgaGGAGGUCuggagcaGCGGCu -3'
miRNA:   3'- gGgUGCUCCAG-----------CCUCCAGug-----CGCUGu -5'
13964 3' -57.9 NC_003521.1 + 18961 0.7 0.790551
Target:  5'- aCCCagcgacaACGAGGa-GGGGGUCgaggacgcgccGCGCGACGa -3'
miRNA:   3'- -GGG-------UGCUCCagCCUCCAG-----------UGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 229055 0.68 0.883125
Target:  5'- cCCCACGAGGaCGaAGGcagUCACccagGCGGCGu -3'
miRNA:   3'- -GGGUGCUCCaGCcUCC---AGUG----CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 5144 0.67 0.901349
Target:  5'- uUCUuCGGGGUCGGGGGguUCAUagauacgaaagggGCGGCGa -3'
miRNA:   3'- -GGGuGCUCCAGCCUCC--AGUG-------------CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 3976 0.68 0.883125
Target:  5'- aCC-CGGGGcaccgucagcgCGGAGGUCugGCG-CGa -3'
miRNA:   3'- gGGuGCUCCa----------GCCUCCAGugCGCuGU- -5'
13964 3' -57.9 NC_003521.1 + 170866 0.68 0.869584
Target:  5'- cUCCGCGGGGgcgggcgCGGGuGGUCAgGCGuCc -3'
miRNA:   3'- -GGGUGCUCCa------GCCU-CCAGUgCGCuGu -5'
13964 3' -57.9 NC_003521.1 + 156471 0.69 0.832511
Target:  5'- aUCCAgGAGG-CGGAGGagGCGCuGAgGg -3'
miRNA:   3'- -GGGUgCUCCaGCCUCCagUGCG-CUgU- -5'
13964 3' -57.9 NC_003521.1 + 210291 0.69 0.830151
Target:  5'- gUCUGCGAGGU-GGAGGaCaccauccucaccaaGCGCGACAu -3'
miRNA:   3'- -GGGUGCUCCAgCCUCCaG--------------UGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 175847 0.66 0.929165
Target:  5'- gCgCACGucGUCGugcGAGGUCAC-CGGCAg -3'
miRNA:   3'- -GgGUGCucCAGC---CUCCAGUGcGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 175395 0.66 0.928673
Target:  5'- aCCCAUGAcccggcgcaggugGGUCagGGAGG-CGCGCGuCu -3'
miRNA:   3'- -GGGUGCU-------------CCAG--CCUCCaGUGCGCuGu -5'
13964 3' -57.9 NC_003521.1 + 1790 0.67 0.913466
Target:  5'- gCCGCGAccaGGUcCGGGGGUC-CgGCGAa- -3'
miRNA:   3'- gGGUGCU---CCA-GCCUCCAGuG-CGCUgu -5'
13964 3' -57.9 NC_003521.1 + 44364 0.67 0.901947
Target:  5'- -gC-CGAGuGccagCGGAGGuUCGCGCGGCAg -3'
miRNA:   3'- ggGuGCUC-Ca---GCCUCC-AGUGCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.