Results 21 - 40 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 204141 | 0.66 | 0.880543 |
Target: 5'- gCGCCggaGCC-CGGccucaGCUCGGCCg -3' miRNA: 3'- aGCGGa--CGGcGUCaaug-CGAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 163383 | 0.66 | 0.852247 |
Target: 5'- aUGCCcgaggagGCgGCGGUggucgugGCGCUgGcGCCCg -3' miRNA: 3'- aGCGGa------CGgCGUCAa------UGCGAgC-CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 54565 | 0.66 | 0.859602 |
Target: 5'- gCGCUUGaCGCGGg--UGUgCGGCCCg -3' miRNA: 3'- aGCGGACgGCGUCaauGCGaGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 129775 | 0.66 | 0.866774 |
Target: 5'- gCGCCUGucCCGCGcacgUGCGCgccgaGGCCg -3' miRNA: 3'- aGCGGAC--GGCGUca--AUGCGag---CCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 130000 | 0.66 | 0.873755 |
Target: 5'- gCGCCgGCgGCGGc-GCGCaaCGGCCg -3' miRNA: 3'- aGCGGaCGgCGUCaaUGCGa-GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 172320 | 0.66 | 0.866774 |
Target: 5'- aCGCCgcUGgCGCAG--GC-CUCGGCCg -3' miRNA: 3'- aGCGG--ACgGCGUCaaUGcGAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 113097 | 0.66 | 0.873755 |
Target: 5'- cCGCCgUGgUGCAGgaGCGgcuCUCGGgCCa -3' miRNA: 3'- aGCGG-ACgGCGUCaaUGC---GAGCCgGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 100184 | 0.66 | 0.859602 |
Target: 5'- gCGCCaGgCGCAG--GCuCUCGGCCg -3' miRNA: 3'- aGCGGaCgGCGUCaaUGcGAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 145651 | 0.66 | 0.859602 |
Target: 5'- gCGCCgagCGCgAGgUGCcCUCGGCCCg -3' miRNA: 3'- aGCGGacgGCG-UCaAUGcGAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 118039 | 0.66 | 0.859602 |
Target: 5'- cCGCCagggGuCCGCA-UUGCuCUCGGCCg -3' miRNA: 3'- aGCGGa---C-GGCGUcAAUGcGAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 109977 | 0.66 | 0.873755 |
Target: 5'- gCGCCUGCaGUAGggcgGCcuGC-CGGUCCa -3' miRNA: 3'- aGCGGACGgCGUCaa--UG--CGaGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 112408 | 0.66 | 0.873755 |
Target: 5'- gCGCCgaccgGCCGCcuuucGGaccgACGCccgcucaggCGGCCCa -3' miRNA: 3'- aGCGGa----CGGCG-----UCaa--UGCGa--------GCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 150520 | 0.66 | 0.859602 |
Target: 5'- -gGCCgGCCGCGGUgcagGCcgacgugacguGCUCGgagauguaGCCCa -3' miRNA: 3'- agCGGaCGGCGUCAa---UG-----------CGAGC--------CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 78018 | 0.66 | 0.866774 |
Target: 5'- cUUGCgCUGaCC-CAGaUACaGCUCGGCCa -3' miRNA: 3'- -AGCG-GAC-GGcGUCaAUG-CGAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 73627 | 0.66 | 0.866065 |
Target: 5'- gCGCCUGCCagcccaaGCAGaaggccucCGCcgCGGCCg -3' miRNA: 3'- aGCGGACGG-------CGUCaau-----GCGa-GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 148511 | 0.66 | 0.873755 |
Target: 5'- -gGCCcaUGCCGCGGcUGCGcCUCcuCCCg -3' miRNA: 3'- agCGG--ACGGCGUCaAUGC-GAGccGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 100649 | 0.66 | 0.859602 |
Target: 5'- cCGuCCcGCCGC-GUUGCG-UCGGCUg -3' miRNA: 3'- aGC-GGaCGGCGuCAAUGCgAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 168255 | 0.66 | 0.857415 |
Target: 5'- aCGCgUUGCCGCAcGagGCGCUgaucuggaucugcaCGGCCg -3' miRNA: 3'- aGCG-GACGGCGU-CaaUGCGA--------------GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 46442 | 0.66 | 0.873755 |
Target: 5'- cCGgCgggGCUGCGGggGCuGgUCGGCCUc -3' miRNA: 3'- aGCgGa--CGGCGUCaaUG-CgAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 105174 | 0.66 | 0.859602 |
Target: 5'- aCGCC-GCCG-----ACGCUgGGCCCc -3' miRNA: 3'- aGCGGaCGGCgucaaUGCGAgCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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