miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 223647 0.73 0.495493
Target:  5'- gCGCCUGCC-CAGcugccagcgcUGCGcCUCGGCCUc -3'
miRNA:   3'- aGCGGACGGcGUCa---------AUGC-GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 223468 0.68 0.796091
Target:  5'- -gGCC-GCCGCGccgGCGUcaCGGCCCg -3'
miRNA:   3'- agCGGaCGGCGUcaaUGCGa-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 223328 0.71 0.579921
Target:  5'- gUCGCgCUGCCGCAGaUAgGUgccccaGGCCUc -3'
miRNA:   3'- -AGCG-GACGGCGUCaAUgCGag----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 223143 0.67 0.812905
Target:  5'- -aGCCaguugGCCG-GGUUACGCagGGCCa -3'
miRNA:   3'- agCGGa----CGGCgUCAAUGCGagCCGGg -5'
13965 3' -59.4 NC_003521.1 + 223015 0.69 0.724129
Target:  5'- aCGCCgugGCCGUAGcccagacgGCGCgcgagaugagCGGCCUc -3'
miRNA:   3'- aGCGGa--CGGCGUCaa------UGCGa---------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 222164 0.67 0.821094
Target:  5'- gCGCCcccgugGCCaGCAGgucCGUgCGGCCCc -3'
miRNA:   3'- aGCGGa-----CGG-CGUCaauGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 221434 0.67 0.837005
Target:  5'- aUCGUgUGCCugggGCuGcUGCGCUgGGCCg -3'
miRNA:   3'- -AGCGgACGG----CGuCaAUGCGAgCCGGg -5'
13965 3' -59.4 NC_003521.1 + 221136 0.67 0.804568
Target:  5'- -aGCCacaCGUucuugggaaAGUUGgGCUCGGCCCa -3'
miRNA:   3'- agCGGacgGCG---------UCAAUgCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 219720 0.72 0.555086
Target:  5'- gUCGCUcgUGCCGCAGcUgaccgagcugugcgaGCGCUgggauaCGGCCCu -3'
miRNA:   3'- -AGCGG--ACGGCGUCaA---------------UGCGA------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 219179 0.67 0.82913
Target:  5'- -aGCCUGCugaCGCAGUcgagacccugGCGggCGGCCUc -3'
miRNA:   3'- agCGGACG---GCGUCAa---------UGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 217600 0.71 0.589538
Target:  5'- cCGCCccgGaCCaGCAGggGCGuCUCGGCCg -3'
miRNA:   3'- aGCGGa--C-GG-CGUCaaUGC-GAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 210114 0.67 0.82913
Target:  5'- gCGCuacgagguagagCUGCCGCaAGUggACGCUCGGaUCUc -3'
miRNA:   3'- aGCG------------GACGGCG-UCAa-UGCGAGCC-GGG- -5'
13965 3' -59.4 NC_003521.1 + 209958 0.66 0.866774
Target:  5'- gCGCCUGUucguggaGCAgcGUUACGUgcucUUGGCCUa -3'
miRNA:   3'- aGCGGACGg------CGU--CAAUGCG----AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 209530 0.79 0.232741
Target:  5'- gUCGCCgcUGCCGCGGUUAUGCgccCGGCg- -3'
miRNA:   3'- -AGCGG--ACGGCGUCAAUGCGa--GCCGgg -5'
13965 3' -59.4 NC_003521.1 + 204384 0.66 0.866774
Target:  5'- gCGCCUgGCCcgagcagguggaggcGCAGUgGCGCcaccaggugcacgUGGCCCa -3'
miRNA:   3'- aGCGGA-CGG---------------CGUCAaUGCGa------------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 204141 0.66 0.880543
Target:  5'- gCGCCggaGCC-CGGccucaGCUCGGCCg -3'
miRNA:   3'- aGCGGa--CGGcGUCaaug-CGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 203369 0.68 0.760929
Target:  5'- aCGCCUccgcagaaaccGCCGCGGUcGC-CUCaGGUCCc -3'
miRNA:   3'- aGCGGA-----------CGGCGUCAaUGcGAG-CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 202602 0.67 0.837005
Target:  5'- cCGCCgagGCCGCcc-UGCGCcUCcuGCCCg -3'
miRNA:   3'- aGCGGa--CGGCGucaAUGCG-AGc-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 202363 0.7 0.637921
Target:  5'- gCGCCaGCUGCGGUauuagagGCGC-CGGgCCCc -3'
miRNA:   3'- aGCGGaCGGCGUCAa------UGCGaGCC-GGG- -5'
13965 3' -59.4 NC_003521.1 + 201943 0.67 0.821094
Target:  5'- cCGUgUGCUGCcaccGGcgGCGCagcucgCGGCCCa -3'
miRNA:   3'- aGCGgACGGCG----UCaaUGCGa-----GCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.