Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13966 | 3' | -54.3 | NC_003521.1 | + | 145303 | 0.66 | 0.982821 |
Target: 5'- uCAUCgugcCGCUcggccacgcgaccaGCGCGUCGGcgaugucggcGCGCGAGg -3' miRNA: 3'- cGUAGa---GCGA--------------CGCGUAGUU----------CGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 70233 | 0.66 | 0.981439 |
Target: 5'- cGCGUCg-GCUucucCGCGggggCGGGCGCGGGu -3' miRNA: 3'- -CGUAGagCGAc---GCGUa---GUUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 75301 | 0.66 | 0.981439 |
Target: 5'- uGCucCUCGCacgagGUGCAggCGAuGCGCGAGa -3' miRNA: 3'- -CGuaGAGCGa----CGCGUa-GUU-CGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 166265 | 0.66 | 0.981439 |
Target: 5'- aGCAggCUCGC-GUGUuuuGUCuGAGCGCGAc -3' miRNA: 3'- -CGUa-GAGCGaCGCG---UAG-UUCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 54271 | 0.66 | 0.979323 |
Target: 5'- gGCGguuccagCUCGCgcaacaagaUGgGCAacgUCGAGCGCGAu -3' miRNA: 3'- -CGUa------GAGCG---------ACgCGU---AGUUCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 77444 | 0.66 | 0.979323 |
Target: 5'- uGCGggcCUCGgUGCGCGUCucGGUGCu-- -3' miRNA: 3'- -CGUa--GAGCgACGCGUAGu-UCGCGcuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 101984 | 0.66 | 0.979323 |
Target: 5'- cCAUCUCGCccccgccGCGCAUCGugcugAGCGUa-- -3' miRNA: 3'- cGUAGAGCGa------CGCGUAGU-----UCGCGcuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 153517 | 0.66 | 0.979323 |
Target: 5'- gGCG-CUCGCUGCGCAccuUCuugaacacGCGCa-- -3' miRNA: 3'- -CGUaGAGCGACGCGU---AGuu------CGCGcuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 112214 | 0.66 | 0.979323 |
Target: 5'- aGCGgaggCGCUGCucaAUCAgcAGUGCGAGg -3' miRNA: 3'- -CGUaga-GCGACGcg-UAGU--UCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 104480 | 0.66 | 0.978654 |
Target: 5'- aCGUcCUCGCUGgGCugcagcagcacguaAUCGgccacgGGCGCGGGg -3' miRNA: 3'- cGUA-GAGCGACgCG--------------UAGU------UCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 130047 | 0.66 | 0.977032 |
Target: 5'- gGCcUCggcgCGCacgUGCGCGggaCAGGCGCGGu -3' miRNA: 3'- -CGuAGa---GCG---ACGCGUa--GUUCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 113436 | 0.66 | 0.977032 |
Target: 5'- gGCAcCUCGCgGCcCAUCuuGGCcGCGAGc -3' miRNA: 3'- -CGUaGAGCGaCGcGUAGu-UCG-CGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 149895 | 0.66 | 0.977032 |
Target: 5'- aGCAcCUCGCcgGCgGCGUCcAGCGCc-- -3' miRNA: 3'- -CGUaGAGCGa-CG-CGUAGuUCGCGcuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 61015 | 0.66 | 0.97631 |
Target: 5'- cGCAcgaUgUCGUUGCGCGUCAccccguccagggagGGCaGCGGc -3' miRNA: 3'- -CGU---AgAGCGACGCGUAGU--------------UCG-CGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 136449 | 0.66 | 0.975572 |
Target: 5'- ---aCUCG-UGCGuCAUCAaggucagccgcaagaAGCGCGAGg -3' miRNA: 3'- cguaGAGCgACGC-GUAGU---------------UCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 213495 | 0.66 | 0.974561 |
Target: 5'- cGCggCUCGCUGCuCAUCua-CGUGGGc -3' miRNA: 3'- -CGuaGAGCGACGcGUAGuucGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 136089 | 0.66 | 0.974561 |
Target: 5'- cGCuggagggCUCGgUGUGCGUCAAGaCGgGAc -3' miRNA: 3'- -CGua-----GAGCgACGCGUAGUUC-GCgCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 109472 | 0.66 | 0.974561 |
Target: 5'- cGCGUCUgGgaacaUGCGCGcCAGGCGCu-- -3' miRNA: 3'- -CGUAGAgCg----ACGCGUaGUUCGCGcuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 61455 | 0.66 | 0.974561 |
Target: 5'- uCAUC-CGCacGCGCGUCAAGCagGUGAc -3' miRNA: 3'- cGUAGaGCGa-CGCGUAGUUCG--CGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 213857 | 0.66 | 0.974561 |
Target: 5'- -aGUCUCGCUGCaggGCGUCcauGGCacccaagaGUGAGg -3' miRNA: 3'- cgUAGAGCGACG---CGUAGu--UCG--------CGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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