miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 145303 0.66 0.982821
Target:  5'- uCAUCgugcCGCUcggccacgcgaccaGCGCGUCGGcgaugucggcGCGCGAGg -3'
miRNA:   3'- cGUAGa---GCGA--------------CGCGUAGUU----------CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 75301 0.66 0.981439
Target:  5'- uGCucCUCGCacgagGUGCAggCGAuGCGCGAGa -3'
miRNA:   3'- -CGuaGAGCGa----CGCGUa-GUU-CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 166265 0.66 0.981439
Target:  5'- aGCAggCUCGC-GUGUuuuGUCuGAGCGCGAc -3'
miRNA:   3'- -CGUa-GAGCGaCGCG---UAG-UUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 70233 0.66 0.981439
Target:  5'- cGCGUCg-GCUucucCGCGggggCGGGCGCGGGu -3'
miRNA:   3'- -CGUAGagCGAc---GCGUa---GUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 153517 0.66 0.979323
Target:  5'- gGCG-CUCGCUGCGCAccuUCuugaacacGCGCa-- -3'
miRNA:   3'- -CGUaGAGCGACGCGU---AGuu------CGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 101984 0.66 0.979323
Target:  5'- cCAUCUCGCccccgccGCGCAUCGugcugAGCGUa-- -3'
miRNA:   3'- cGUAGAGCGa------CGCGUAGU-----UCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 112214 0.66 0.979323
Target:  5'- aGCGgaggCGCUGCucaAUCAgcAGUGCGAGg -3'
miRNA:   3'- -CGUaga-GCGACGcg-UAGU--UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 77444 0.66 0.979323
Target:  5'- uGCGggcCUCGgUGCGCGUCucGGUGCu-- -3'
miRNA:   3'- -CGUa--GAGCgACGCGUAGu-UCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 54271 0.66 0.979323
Target:  5'- gGCGguuccagCUCGCgcaacaagaUGgGCAacgUCGAGCGCGAu -3'
miRNA:   3'- -CGUa------GAGCG---------ACgCGU---AGUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 104480 0.66 0.978654
Target:  5'- aCGUcCUCGCUGgGCugcagcagcacguaAUCGgccacgGGCGCGGGg -3'
miRNA:   3'- cGUA-GAGCGACgCG--------------UAGU------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 149895 0.66 0.977032
Target:  5'- aGCAcCUCGCcgGCgGCGUCcAGCGCc-- -3'
miRNA:   3'- -CGUaGAGCGa-CG-CGUAGuUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 130047 0.66 0.977032
Target:  5'- gGCcUCggcgCGCacgUGCGCGggaCAGGCGCGGu -3'
miRNA:   3'- -CGuAGa---GCG---ACGCGUa--GUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 113436 0.66 0.977032
Target:  5'- gGCAcCUCGCgGCcCAUCuuGGCcGCGAGc -3'
miRNA:   3'- -CGUaGAGCGaCGcGUAGu-UCG-CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 61015 0.66 0.97631
Target:  5'- cGCAcgaUgUCGUUGCGCGUCAccccguccagggagGGCaGCGGc -3'
miRNA:   3'- -CGU---AgAGCGACGCGUAGU--------------UCG-CGCUc -5'
13966 3' -54.3 NC_003521.1 + 136449 0.66 0.975572
Target:  5'- ---aCUCG-UGCGuCAUCAaggucagccgcaagaAGCGCGAGg -3'
miRNA:   3'- cguaGAGCgACGC-GUAGU---------------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 136089 0.66 0.974561
Target:  5'- cGCuggagggCUCGgUGUGCGUCAAGaCGgGAc -3'
miRNA:   3'- -CGua-----GAGCgACGCGUAGUUC-GCgCUc -5'
13966 3' -54.3 NC_003521.1 + 109472 0.66 0.974561
Target:  5'- cGCGUCUgGgaacaUGCGCGcCAGGCGCu-- -3'
miRNA:   3'- -CGUAGAgCg----ACGCGUaGUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 61455 0.66 0.974561
Target:  5'- uCAUC-CGCacGCGCGUCAAGCagGUGAc -3'
miRNA:   3'- cGUAGaGCGa-CGCGUAGUUCG--CGCUc -5'
13966 3' -54.3 NC_003521.1 + 213857 0.66 0.974561
Target:  5'- -aGUCUCGCUGCaggGCGUCcauGGCacccaagaGUGAGg -3'
miRNA:   3'- cgUAGAGCGACG---CGUAGu--UCG--------CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 128999 0.66 0.974561
Target:  5'- aGCGUCUgcaagaaGCUGUGgAUCAGGcCGCGc- -3'
miRNA:   3'- -CGUAGAg------CGACGCgUAGUUC-GCGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.