Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13966 | 3' | -54.3 | NC_003521.1 | + | 31416 | 1.1 | 0.005318 |
Target: 5'- uGCAUCUCGCUGCGCAUCAAGCGCGAGu -3' miRNA: 3'- -CGUAGAGCGACGCGUAGUUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 66423 | 0.77 | 0.526155 |
Target: 5'- aCAUCUguUGCUGCGCGcgcugCGGGUGCGAGg -3' miRNA: 3'- cGUAGA--GCGACGCGUa----GUUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 153982 | 0.77 | 0.544733 |
Target: 5'- gGCAUCgugcCGCUgguggacGCGCGUCccaagGAGCGCGAGg -3' miRNA: 3'- -CGUAGa---GCGA-------CGCGUAG-----UUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 143746 | 0.76 | 0.575472 |
Target: 5'- cCGUCUCGCUGUGC-UUgcGCGCGAu -3' miRNA: 3'- cGUAGAGCGACGCGuAGuuCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 103397 | 0.74 | 0.663092 |
Target: 5'- cGCGUgCUCGCggaagguguugaucUGCGCGUCGAcguGCGUGAGc -3' miRNA: 3'- -CGUA-GAGCG--------------ACGCGUAGUU---CGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 159828 | 0.74 | 0.676151 |
Target: 5'- gGCcgUgaggCGCUGCGCGg-AGGCGCGAGc -3' miRNA: 3'- -CGuaGa---GCGACGCGUagUUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 58941 | 0.74 | 0.70603 |
Target: 5'- gGCAUgacCUCGCUGCucaccuGCGUCAuGCGCGGc -3' miRNA: 3'- -CGUA---GAGCGACG------CGUAGUuCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 69991 | 0.73 | 0.735361 |
Target: 5'- cGCGUCUCGUcGUGCAgucccagCGAGCGCa-- -3' miRNA: 3'- -CGUAGAGCGaCGCGUa------GUUCGCGcuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 123178 | 0.73 | 0.754493 |
Target: 5'- cCGUCUCGCgGCGCAgucgCAGGCG-GAa -3' miRNA: 3'- cGUAGAGCGaCGCGUa---GUUCGCgCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 77396 | 0.73 | 0.754493 |
Target: 5'- -gGUCUCGCaGCGCAagGccguGCGCGAGu -3' miRNA: 3'- cgUAGAGCGaCGCGUagUu---CGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 224114 | 0.73 | 0.763906 |
Target: 5'- ---aCUCGCcGCGCAUCAcGCGCGu- -3' miRNA: 3'- cguaGAGCGaCGCGUAGUuCGCGCuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 121486 | 0.72 | 0.773205 |
Target: 5'- aCAUCUUccuggaGCUGCGCGcCcuGCGCGAGa -3' miRNA: 3'- cGUAGAG------CGACGCGUaGuuCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 84905 | 0.72 | 0.781469 |
Target: 5'- gGCAUCUCGCcggugGCGCGUCAGGaagccuaCGuCGAa -3' miRNA: 3'- -CGUAGAGCGa----CGCGUAGUUC-------GC-GCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 93177 | 0.72 | 0.782381 |
Target: 5'- gGCGcCgUCGCUGcCGUAUCGAGCGCacGGGg -3' miRNA: 3'- -CGUaG-AGCGAC-GCGUAGUUCGCG--CUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 118788 | 0.72 | 0.791426 |
Target: 5'- uGCAUCUCGCUGCGgAggUAGGagGUGGGu -3' miRNA: 3'- -CGUAGAGCGACGCgUa-GUUCg-CGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 196032 | 0.72 | 0.791426 |
Target: 5'- cGCcgCUCGUgccaggcaacGCGCGUCcuGCGUGAGg -3' miRNA: 3'- -CGuaGAGCGa---------CGCGUAGuuCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 122474 | 0.72 | 0.800331 |
Target: 5'- cGCG-CUCGCagGCaGCAUgGAGuCGCGAGg -3' miRNA: 3'- -CGUaGAGCGa-CG-CGUAgUUC-GCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 156881 | 0.72 | 0.809087 |
Target: 5'- gGCGUCgCGCa--GCAcCAGGCGCGAGa -3' miRNA: 3'- -CGUAGaGCGacgCGUaGUUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 88382 | 0.72 | 0.817688 |
Target: 5'- aGCGUCUCGCUGa-CGUCGGGCacguaGAGg -3' miRNA: 3'- -CGUAGAGCGACgcGUAGUUCGcg---CUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 198514 | 0.71 | 0.825288 |
Target: 5'- gGCua-UCGCUGCgGCGUCAgccagcuauugauAGCGCGAc -3' miRNA: 3'- -CGuagAGCGACG-CGUAGU-------------UCGCGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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