miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 138854 0.67 0.9528
Target:  5'- cGUAC--AUGgUGUCCGGCGAgaUGCc -3'
miRNA:   3'- aCAUGcgUACgACAGGCCGCUgcACG- -5'
13967 5' -55.3 NC_003521.1 + 201252 0.67 0.940109
Target:  5'- --gGCGCcUGCUuggccUCCGGCGugGgGCu -3'
miRNA:   3'- acaUGCGuACGAc----AGGCCGCugCaCG- -5'
13967 5' -55.3 NC_003521.1 + 143826 0.67 0.956593
Target:  5'- cGUGCccgccagcgaugGCGgcUGCUGcucgucgCCGGCGGCGcGCg -3'
miRNA:   3'- aCAUG------------CGU--ACGACa------GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 240787 0.67 0.952408
Target:  5'- gUGUGCGUccaccgGUCUGGCGuccccagGCGUGCa -3'
miRNA:   3'- -ACAUGCGuacga-CAGGCCGC-------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 42296 0.67 0.94879
Target:  5'- gGUAgcagcUGCGUGgUG-CCGGCGGCGUc- -3'
miRNA:   3'- aCAU-----GCGUACgACaGGCCGCUGCAcg -5'
13967 5' -55.3 NC_003521.1 + 85586 0.67 0.944561
Target:  5'- gGgcCGCGggccaagGCUGgagcgaCGGCGACGUGg -3'
miRNA:   3'- aCauGCGUa------CGACag----GCCGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 147975 0.67 0.940109
Target:  5'- cGUGCGCAcgggucacauggUGCUGgCCGuguuCGugGUGUa -3'
miRNA:   3'- aCAUGCGU------------ACGACaGGCc---GCugCACG- -5'
13967 5' -55.3 NC_003521.1 + 53954 0.68 0.920051
Target:  5'- cGUAC-CGUGUauaacuaacaUGcCCGGCGGCG-GCa -3'
miRNA:   3'- aCAUGcGUACG----------ACaGGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 32097 0.68 0.920051
Target:  5'- --aGCGcCAUGC-GUuuGGCGGCGcgGCu -3'
miRNA:   3'- acaUGC-GUACGaCAggCCGCUGCa-CG- -5'
13967 5' -55.3 NC_003521.1 + 143538 0.68 0.914471
Target:  5'- --cACGCGcGCcG-CCGGCGACGaGCa -3'
miRNA:   3'- acaUGCGUaCGaCaGGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 45787 0.68 0.935433
Target:  5'- --gGCGCccGCUccaaGUCCaugcggcucgacGGCGACGUGUa -3'
miRNA:   3'- acaUGCGuaCGA----CAGG------------CCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 85499 0.68 0.920051
Target:  5'- uUGcGCGCcgGCcccaugucucUGUCCGGCG-CG-GCg -3'
miRNA:   3'- -ACaUGCGuaCG----------ACAGGCCGCuGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 138911 0.68 0.925404
Target:  5'- aGUACGCcgGCucggUGUCggaccaCGGCGGC-UGCu -3'
miRNA:   3'- aCAUGCGuaCG----ACAG------GCCGCUGcACG- -5'
13967 5' -55.3 NC_003521.1 + 239369 0.68 0.925404
Target:  5'- aUGccCGUGUGCUGccaCCGGCGGCGcaGCu -3'
miRNA:   3'- -ACauGCGUACGACa--GGCCGCUGCa-CG- -5'
13967 5' -55.3 NC_003521.1 + 228736 0.68 0.930532
Target:  5'- gGgcUGCGUGgUGagCaGCGGCGUGCg -3'
miRNA:   3'- aCauGCGUACgACagGcCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 167006 0.68 0.935433
Target:  5'- aGUugGCGUagaagguccgGUUG-CCGGCGACGaUGa -3'
miRNA:   3'- aCAugCGUA----------CGACaGGCCGCUGC-ACg -5'
13967 5' -55.3 NC_003521.1 + 201533 0.68 0.935433
Target:  5'- gGUucCGCuacgGCg--CCGGCGACGUGg -3'
miRNA:   3'- aCAu-GCGua--CGacaGGCCGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 216606 0.68 0.925404
Target:  5'- --aGCGCGUGCUGgaucuaCUGGCGcuACGaGCg -3'
miRNA:   3'- acaUGCGUACGACa-----GGCCGC--UGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 149756 0.68 0.920051
Target:  5'- aGUcGCGCAgcgGCgucUGUCCGGCGAagccGCg -3'
miRNA:   3'- aCA-UGCGUa--CG---ACAGGCCGCUgca-CG- -5'
13967 5' -55.3 NC_003521.1 + 201947 0.68 0.925404
Target:  5'- aUGccCGUGUGCUGccaCCGGCGGCGcaGCu -3'
miRNA:   3'- -ACauGCGUACGACa--GGCCGCUGCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.