miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 218609 0.72 0.721948
Target:  5'- -gGCcuGCCUGGugauGAAC-ACCGGCACCa -3'
miRNA:   3'- gaCG--CGGACCu---CUUGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 218439 0.71 0.778355
Target:  5'- -aGCGgCggcaccacGGAGGACAugGCCGGCACCa -3'
miRNA:   3'- gaCGCgGa-------CCUCUUGU--UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 217886 0.66 0.969779
Target:  5'- --aCGCCgaGGAGAugGCGGCCGAgaCGCCc -3'
miRNA:   3'- gacGCGGa-CCUCU--UGUUGGCU--GUGGa -5'
13968 3' -55.5 NC_003521.1 + 217703 0.7 0.854017
Target:  5'- -cGCaCCUGGAGAGC-ACCGuguuccugugcuGCACCg -3'
miRNA:   3'- gaCGcGGACCUCUUGuUGGC------------UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 216471 0.69 0.896184
Target:  5'- gUGUGCCaGGAGGACc-CCG-CGCCg -3'
miRNA:   3'- gACGCGGaCCUCUUGuuGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 215324 0.67 0.948832
Target:  5'- -aGCGUgUaGaAGAGCAgcACCGACACCUu -3'
miRNA:   3'- gaCGCGgAcC-UCUUGU--UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 213711 0.66 0.963632
Target:  5'- gUGgGCCUcGGGGAugccCAGCCagacGGCGCCg -3'
miRNA:   3'- gACgCGGA-CCUCUu---GUUGG----CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 211666 0.67 0.944586
Target:  5'- gUGCGCC-GGcugcuGCAcgagaGCCGGCGCCUg -3'
miRNA:   3'- gACGCGGaCCucu--UGU-----UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 211404 0.67 0.93542
Target:  5'- -gGCGaCUGGAGGAUGAuccgcugcguccUCGGCGCCUg -3'
miRNA:   3'- gaCGCgGACCUCUUGUU------------GGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 211197 0.69 0.882964
Target:  5'- uUGCaCCUGGGcGAcgACGACCGACgACCc -3'
miRNA:   3'- gACGcGGACCU-CU--UGUUGGCUG-UGGa -5'
13968 3' -55.5 NC_003521.1 + 211108 0.67 0.952856
Target:  5'- -cGCGCCgaGGcucAGCAGCCaGGCGCCg -3'
miRNA:   3'- gaCGCGGa-CCuc-UUGUUGG-CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 204385 0.66 0.963632
Target:  5'- -gGCGCCUGGcccGAGCAgguggaggcgcAgUGGCGCCa -3'
miRNA:   3'- gaCGCGGACCu--CUUGU-----------UgGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 203671 0.66 0.963632
Target:  5'- gUGCgacgGCCUGGGaGGCGugGCCGGgACCUg -3'
miRNA:   3'- gACG----CGGACCUcUUGU--UGGCUgUGGA- -5'
13968 3' -55.5 NC_003521.1 + 201007 0.7 0.83837
Target:  5'- -gGCGCCaucggcGGAGGACcgcCCGGCGCCc -3'
miRNA:   3'- gaCGCGGa-----CCUCUUGuu-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 200927 0.68 0.914358
Target:  5'- -cGCGCCcgccGGGACGACCGcACGCCc -3'
miRNA:   3'- gaCGCGGacc-UCUUGUUGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 195405 0.67 0.940116
Target:  5'- -cGCGCCgacGGcGGGC-ACCGGCuACCUg -3'
miRNA:   3'- gaCGCGGa--CCuCUUGuUGGCUG-UGGA- -5'
13968 3' -55.5 NC_003521.1 + 193244 0.7 0.83837
Target:  5'- -aGCGCCUGGGGuaccccggauACggUCGGCugCg -3'
miRNA:   3'- gaCGCGGACCUCu---------UGuuGGCUGugGa -5'
13968 3' -55.5 NC_003521.1 + 193036 0.66 0.960252
Target:  5'- -cGUGCCggUGGAGAucgagcugauggACGGCCcgcgGACGCCg -3'
miRNA:   3'- gaCGCGG--ACCUCU------------UGUUGG----CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 192239 0.72 0.712238
Target:  5'- -gGCGCCgcgGGAGggUGGCCGuuagccguCACCUu -3'
miRNA:   3'- gaCGCGGa--CCUCuuGUUGGCu-------GUGGA- -5'
13968 3' -55.5 NC_003521.1 + 185120 0.67 0.944586
Target:  5'- gCUGUGCCUGGGGucgGCAgucgcAgCGGCGCg- -3'
miRNA:   3'- -GACGCGGACCUCu--UGU-----UgGCUGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.