miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 5' -59.1 NC_003521.1 + 28247 0.72 0.597102
Target:  5'- cUCACgCUGCCgccguGGCCGUgagCGCCGCCUGGc -3'
miRNA:   3'- -GGUG-GAUGG-----CCGGUAg--GCGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 31705 0.72 0.54938
Target:  5'- aCGCCgUGCUGGCgcugcgcauCAUCCGCCugCUGc -3'
miRNA:   3'- gGUGG-AUGGCCG---------GUAGGCGGugGACu -5'
13968 5' -59.1 NC_003521.1 + 88034 0.73 0.521307
Target:  5'- gCACCUGgccCUGGCC-UgCGCCACCUGu -3'
miRNA:   3'- gGUGGAU---GGCCGGuAgGCGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 116085 0.75 0.391455
Target:  5'- gCGCCUGCUGaGCCAcCCGC-GCCUGAg -3'
miRNA:   3'- gGUGGAUGGC-CGGUaGGCGgUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 218902 0.7 0.674301
Target:  5'- gCGCC-GCCGGCCGUggccgcuuaCCGCCGCgcgCUGGc -3'
miRNA:   3'- gGUGGaUGGCCGGUA---------GGCGGUG---GACU- -5'
13968 5' -59.1 NC_003521.1 + 52507 0.71 0.625089
Target:  5'- aCCGCCUGCCGcugcccaacuguaGCCcgCCGCCcuACCg-- -3'
miRNA:   3'- -GGUGGAUGGC-------------CGGuaGGCGG--UGGacu -5'
13968 5' -59.1 NC_003521.1 + 102002 0.73 0.539965
Target:  5'- aCgACCUGCCGGCCuUCC-CCAUCUc- -3'
miRNA:   3'- -GgUGGAUGGCCGGuAGGcGGUGGAcu -5'
13968 5' -59.1 NC_003521.1 + 182435 0.77 0.331357
Target:  5'- cCCACgcGCCGGCCGUCCGUCACgaGu -3'
miRNA:   3'- -GGUGgaUGGCCGGUAGGCGGUGgaCu -5'
13968 5' -59.1 NC_003521.1 + 121035 0.71 0.623155
Target:  5'- uUCACCUggccccaguggcagGCCGG-CAUCCaggcgcGCCACCUGGu -3'
miRNA:   3'- -GGUGGA--------------UGGCCgGUAGG------CGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 63493 0.79 0.24875
Target:  5'- gCCGCCgguuCCGGCCGuUCCGCUGCCgGAa -3'
miRNA:   3'- -GGUGGau--GGCCGGU-AGGCGGUGGaCU- -5'
13968 5' -59.1 NC_003521.1 + 214303 0.72 0.54938
Target:  5'- uUACCUGuCCGGCCAccggucuaaCGCCACCcUGAg -3'
miRNA:   3'- gGUGGAU-GGCCGGUag-------GCGGUGG-ACU- -5'
13968 5' -59.1 NC_003521.1 + 26192 0.72 0.597102
Target:  5'- gCCGCCUGCaaGCaCAUCUuggauuuuGCCACCUGGc -3'
miRNA:   3'- -GGUGGAUGgcCG-GUAGG--------CGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 92130 0.73 0.521307
Target:  5'- aCCGCCgccGCCGuCCugGUCCGCCGcCCUGGa -3'
miRNA:   3'- -GGUGGa--UGGCcGG--UAGGCGGU-GGACU- -5'
13968 5' -59.1 NC_003521.1 + 90216 0.73 0.521307
Target:  5'- gCCGCCagagACgCGGCuuuuuCAUCCGCCACCaGAu -3'
miRNA:   3'- -GGUGGa---UG-GCCG-----GUAGGCGGUGGaCU- -5'
13968 5' -59.1 NC_003521.1 + 43746 0.74 0.484791
Target:  5'- gCCGCCg--CGGCCAgcacggCCGCCGCgCUGGc -3'
miRNA:   3'- -GGUGGaugGCCGGUa-----GGCGGUG-GACU- -5'
13968 5' -59.1 NC_003521.1 + 85661 0.75 0.424055
Target:  5'- gCCugCUGCCGGCCAagcgCaGCCGCUUGu -3'
miRNA:   3'- -GGugGAUGGCCGGUa---GgCGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 168841 0.7 0.683887
Target:  5'- gCCGCCgcUgGGUCAgCCGCCACCUu- -3'
miRNA:   3'- -GGUGGauGgCCGGUaGGCGGUGGAcu -5'
13968 5' -59.1 NC_003521.1 + 209835 0.7 0.674301
Target:  5'- gCGCCc-CCGGaCCcgCCGCCACCg-- -3'
miRNA:   3'- gGUGGauGGCC-GGuaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 213884 0.71 0.635723
Target:  5'- uCCugCUGCgCGGCgA-CCGCCACCc-- -3'
miRNA:   3'- -GGugGAUG-GCCGgUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 218769 0.71 0.626055
Target:  5'- uCUGCCUGCUGGCCugGUUCGCCuuuCCcGAc -3'
miRNA:   3'- -GGUGGAUGGCCGG--UAGGCGGu--GGaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.