miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 54162 0.66 0.978029
Target:  5'- -gAGgaGUGCugGggGccccugugucaACCGgAGGAGCa -3'
miRNA:   3'- cgUCgaCACGugCaaC-----------UGGC-UCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 56784 0.66 0.978029
Target:  5'- aGCuGCUGUGCGCGagGGCucgCGAcggcaccucGGGGUg -3'
miRNA:   3'- -CGuCGACACGUGCaaCUG---GCU---------CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 57285 0.71 0.847183
Target:  5'- aGCAGCaggucgGUGCGCGgcGACUGGuGGAuaaGCg -3'
miRNA:   3'- -CGUCGa-----CACGUGCaaCUGGCU-CCU---CG- -5'
13969 5' -54.4 NC_003521.1 + 60547 0.66 0.98187
Target:  5'- uGCuGCUcaacGUGCGCGccuacuucccccUGcgguacACCGAGGAGCa -3'
miRNA:   3'- -CGuCGA----CACGUGCa-----------AC------UGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 60688 0.71 0.862462
Target:  5'- uGCGGCc--GCGCGgggGACCcGGGGGCg -3'
miRNA:   3'- -CGUCGacaCGUGCaa-CUGGcUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 68191 0.72 0.814431
Target:  5'- -aAGCggggGCGCGUgagGACCGAGGAcGUg -3'
miRNA:   3'- cgUCGaca-CGUGCAa--CUGGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 69417 0.68 0.957334
Target:  5'- -gAGCcuccUGCugGUgGACCG-GGAGCa -3'
miRNA:   3'- cgUCGac--ACGugCAaCUGGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 74632 0.71 0.847183
Target:  5'- aCAGCggggugGUGCGCGg-GACCcuGGAGCg -3'
miRNA:   3'- cGUCGa-----CACGUGCaaCUGGcuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 74995 0.68 0.953554
Target:  5'- -gAGCggGUGCGCGUagUGAUCGuGG-GCc -3'
miRNA:   3'- cgUCGa-CACGUGCA--ACUGGCuCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 76533 0.7 0.869804
Target:  5'- uGUGGCUGcUGCuGCGgUGGCUGuccAGGAGCg -3'
miRNA:   3'- -CGUCGAC-ACG-UGCaACUGGC---UCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 79196 0.66 0.981671
Target:  5'- gGUGGCgccgaagaaacgcaGCACGUUGcCCGAGG-GCa -3'
miRNA:   3'- -CGUCGaca-----------CGUGCAACuGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 80140 0.67 0.966163
Target:  5'- uGCGGCcggUGcUGCGCGUccagccgcuggagGGCC-AGGAGCa -3'
miRNA:   3'- -CGUCG---AC-ACGUGCAa------------CUGGcUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 80410 0.67 0.964251
Target:  5'- uGCGG-UGUGCGCGgguuucgucACCGGGGAacGCg -3'
miRNA:   3'- -CGUCgACACGUGCaac------UGGCUCCU--CG- -5'
13969 5' -54.4 NC_003521.1 + 86138 0.73 0.741819
Target:  5'- --uGCUGaaggGCACGgUGACCaGGGAGCg -3'
miRNA:   3'- cguCGACa---CGUGCaACUGGcUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 86442 0.68 0.945333
Target:  5'- -uGGCg--GCAgCGgcGACCGAGGAcGCg -3'
miRNA:   3'- cgUCGacaCGU-GCaaCUGGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 86866 0.76 0.580228
Target:  5'- uGCAagacGCUGUucgacaccaugacgGCGCGgcgggUGGCCGAGGAGUg -3'
miRNA:   3'- -CGU----CGACA--------------CGUGCa----ACUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 87161 0.68 0.936211
Target:  5'- cGCAGUUcGUGCGCGc-GGCCGuGcAGCg -3'
miRNA:   3'- -CGUCGA-CACGUGCaaCUGGCuCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 87260 0.77 0.537897
Target:  5'- aGCGGCUGUGCGcCGUgcgcguggccaacgGGcCCGAGGuGCg -3'
miRNA:   3'- -CGUCGACACGU-GCAa-------------CU-GGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 88017 0.65 0.985688
Target:  5'- -gAGCUGUaccaccuGC-CGgUGACCGAGGcgguGCg -3'
miRNA:   3'- cgUCGACA-------CGuGCaACUGGCUCCu---CG- -5'
13969 5' -54.4 NC_003521.1 + 88524 0.66 0.978029
Target:  5'- cGCAGCcGUGCAgGcgcACCGAaacggccuccucGGGGCa -3'
miRNA:   3'- -CGUCGaCACGUgCaacUGGCU------------CCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.