miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 137921 0.71 0.831155
Target:  5'- cGUGGCUG-GCGgGUcgcgguucccUGcCCGAGGAGCc -3'
miRNA:   3'- -CGUCGACaCGUgCA----------ACuGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 127595 0.72 0.822876
Target:  5'- aGUAGCUGUGCGCGaaGGCCaGuAGGcuGCg -3'
miRNA:   3'- -CGUCGACACGUGCaaCUGG-C-UCCu-CG- -5'
13969 5' -54.4 NC_003521.1 + 100129 0.72 0.814431
Target:  5'- cGCGGCUGgcgGUccuGCGggaaGGCCGuGGGGCu -3'
miRNA:   3'- -CGUCGACa--CG---UGCaa--CUGGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 35468 0.72 0.805826
Target:  5'- cGCAGgUcGUGCACGgcGcagcugccgccGCCGAGGAGg -3'
miRNA:   3'- -CGUCgA-CACGUGCaaC-----------UGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 86138 0.73 0.741819
Target:  5'- --uGCUGaaggGCACGgUGACCaGGGAGCg -3'
miRNA:   3'- cguCGACa---CGUGCaACUGGcUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 151250 0.7 0.876941
Target:  5'- cGCGGcCUG-GgACGgcGACgaCGAGGAGCg -3'
miRNA:   3'- -CGUC-GACaCgUGCaaCUG--GCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 155297 0.7 0.88992
Target:  5'- cGCGGCUGUuccucucGCAC----GCCGAGGuGCa -3'
miRNA:   3'- -CGUCGACA-------CGUGcaacUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 12364 0.68 0.945333
Target:  5'- aGCAGCUucuggGUGC-CGUUGugCcaacuauGGGGCg -3'
miRNA:   3'- -CGUCGA-----CACGuGCAACugGcu-----CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 186407 0.68 0.945333
Target:  5'- gGCAGCaGUGCAgGUaGAUC-AGGuAGCa -3'
miRNA:   3'- -CGUCGaCACGUgCAaCUGGcUCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 191620 0.69 0.931307
Target:  5'- uGCuguuuGCUGUGCGCGgcGAagCGAGcgaGAGCu -3'
miRNA:   3'- -CGu----CGACACGUGCaaCUg-GCUC---CUCG- -5'
13969 5' -54.4 NC_003521.1 + 118686 0.69 0.929791
Target:  5'- gGCGGCgGUaccGCugGUggagggcaggcucaUGGgCGAGGGGCg -3'
miRNA:   3'- -CGUCGaCA---CGugCA--------------ACUgGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 171420 0.69 0.926173
Target:  5'- aGCAGgaGgcuCACGgugcGAUUGAGGAGCa -3'
miRNA:   3'- -CGUCgaCac-GUGCaa--CUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 117924 0.69 0.926173
Target:  5'- aCGGCgGUGCGCag-GACgGGGGAGg -3'
miRNA:   3'- cGUCGaCACGUGcaaCUGgCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 206124 0.69 0.924056
Target:  5'- uCAGCUGcUGCGCGaugcugagaacgGGCCGGGGAaagGCc -3'
miRNA:   3'- cGUCGAC-ACGUGCaa----------CUGGCUCCU---CG- -5'
13969 5' -54.4 NC_003521.1 + 167912 0.69 0.915217
Target:  5'- gGCAGgUGggGCGCcgcGAUCGAGGGGUa -3'
miRNA:   3'- -CGUCgACa-CGUGcaaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 121825 0.69 0.911752
Target:  5'- gGUAGUgGUGCACGUUGAugUCGGGcacguucaccaucuuGAGCg -3'
miRNA:   3'- -CGUCGaCACGUGCAACU--GGCUC---------------CUCG- -5'
13969 5' -54.4 NC_003521.1 + 144898 0.69 0.909396
Target:  5'- uGCuGCgGgcccacgGCAUGccggUGGCCGAGGAGUu -3'
miRNA:   3'- -CGuCGaCa------CGUGCa---ACUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 91525 0.69 0.909396
Target:  5'- -gAGgUGgGCggaGCGUcGACCGGGGAGCc -3'
miRNA:   3'- cgUCgACaCG---UGCAaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 154644 0.7 0.890581
Target:  5'- uCAGCaa-GCACGUgccgcUGGCCGAGGccGGCa -3'
miRNA:   3'- cGUCGacaCGUGCA-----ACUGGCUCC--UCG- -5'
13969 5' -54.4 NC_003521.1 + 120926 0.7 0.890581
Target:  5'- uGCGGCUGccCGCGgcGGCggcuccggCGAGGGGCa -3'
miRNA:   3'- -CGUCGACacGUGCaaCUG--------GCUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.