Results 1 - 20 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13970 | 3' | -48.9 | NC_003521.1 | + | 207329 | 0.66 | 0.999939 |
Target: 5'- aGCAGguC-UUCGG-GGGGCGcgucccucgggucgGCGCGGc -3' miRNA: 3'- -CGUCguGaAAGCUaCCUUGU--------------UGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 104222 | 0.66 | 0.999944 |
Target: 5'- uGCAGCcCag-CGAggacgUGGAGCuGCGCGa -3' miRNA: 3'- -CGUCGuGaaaGCU-----ACCUUGuUGCGCc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 32111 | 0.66 | 0.999927 |
Target: 5'- gGCGGCGCggcugaucUCGGgcaGGuAGCGgGCGCGGu -3' miRNA: 3'- -CGUCGUGaa------AGCUa--CC-UUGU-UGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 101481 | 0.66 | 0.999944 |
Target: 5'- aGUGGCGCgugaGGUGcucGAGCAGCgGCGGc -3' miRNA: 3'- -CGUCGUGaaagCUAC---CUUGUUG-CGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 99617 | 0.66 | 0.999876 |
Target: 5'- uGCAGCGCc--CGgcGGcGCAGCGCc- -3' miRNA: 3'- -CGUCGUGaaaGCuaCCuUGUUGCGcc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 139693 | 0.66 | 0.999927 |
Target: 5'- uGCAGCACg--CGAUuGGccAGC-ACGgGGa -3' miRNA: 3'- -CGUCGUGaaaGCUA-CC--UUGuUGCgCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 131054 | 0.66 | 0.999876 |
Target: 5'- gGCGGCGggccuCUggacgCGGUGGcGGCGAcCGCGGc -3' miRNA: 3'- -CGUCGU-----GAaa---GCUACC-UUGUU-GCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 28837 | 0.66 | 0.999927 |
Target: 5'- uGCGGCGCcuggaCGAcgagcUGcGGCGGCGCGGc -3' miRNA: 3'- -CGUCGUGaaa--GCU-----ACcUUGUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 100522 | 0.66 | 0.999944 |
Target: 5'- cGguGCACgg-UGgcGGGACAGCuGgGGa -3' miRNA: 3'- -CguCGUGaaaGCuaCCUUGUUG-CgCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 75456 | 0.66 | 0.999841 |
Target: 5'- uGCAGCGCaagaUCGAcgagaUGGAcauccccaACGACGUGa -3' miRNA: 3'- -CGUCGUGaa--AGCU-----ACCU--------UGUUGCGCc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 163217 | 0.66 | 0.999944 |
Target: 5'- nGCAGUAgCUccggCGGccUGGGACu-CGCGGa -3' miRNA: 3'- -CGUCGU-GAaa--GCU--ACCUUGuuGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 52284 | 0.66 | 0.999927 |
Target: 5'- aGCGGCG--UUC-AUGGugauGGCGACGUGGg -3' miRNA: 3'- -CGUCGUgaAAGcUACC----UUGUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 143037 | 0.66 | 0.999904 |
Target: 5'- gGCuAGCACcuuccgCGAccUGGAugGugGUGGu -3' miRNA: 3'- -CG-UCGUGaaa---GCU--ACCUugUugCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 145485 | 0.66 | 0.999876 |
Target: 5'- cGCA-CGCUgcaGGUGGAGCccuGCGCGc -3' miRNA: 3'- -CGUcGUGAaagCUACCUUGu--UGCGCc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 128184 | 0.66 | 0.999876 |
Target: 5'- uGCAGCACcg--GGUGGcACAGCGUc- -3' miRNA: 3'- -CGUCGUGaaagCUACCuUGUUGCGcc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 164210 | 0.66 | 0.999841 |
Target: 5'- gGCGGgGCgg-CGGUGGuAGCGGCGgcUGGa -3' miRNA: 3'- -CGUCgUGaaaGCUACC-UUGUUGC--GCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 178843 | 0.66 | 0.999841 |
Target: 5'- gGCGGCGCgggggCGAcgGGAAagucaGCGGg -3' miRNA: 3'- -CGUCGUGaaa--GCUa-CCUUguug-CGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 131261 | 0.66 | 0.999944 |
Target: 5'- aGCGGCGCUUUUGAUuucaccggccaGAACcuACGuCGGg -3' miRNA: 3'- -CGUCGUGAAAGCUAc----------CUUGu-UGC-GCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 156585 | 0.66 | 0.999944 |
Target: 5'- cGCAucCACcccgaGGUGGuGCAGCGCGGc -3' miRNA: 3'- -CGUc-GUGaaag-CUACCuUGUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 224781 | 0.66 | 0.999841 |
Target: 5'- aGCAGCGCccgcaccacgUCGugcGGGACGcGCGUGGc -3' miRNA: 3'- -CGUCGUGaa--------AGCua-CCUUGU-UGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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