miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 3' -48.9 NC_003521.1 + 1332 0.67 0.999744
Target:  5'- cGCGGCugUaUCGGuccaaccggcUGGGGCugAACGCGc -3'
miRNA:   3'- -CGUCGugAaAGCU----------ACCUUG--UUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 4433 0.68 0.998647
Target:  5'- uCAGgACUgaguccUCGAgcaugcGGAGCGAUGCGGc -3'
miRNA:   3'- cGUCgUGAa-----AGCUa-----CCUUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 5302 0.72 0.979197
Target:  5'- cCGGCAUgUUUCGcgGGGGCGGCGUGc -3'
miRNA:   3'- cGUCGUG-AAAGCuaCCUUGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 8444 0.71 0.991037
Target:  5'- cCAGCGCgagaCGGUGGAccuccGCuuCGCGGu -3'
miRNA:   3'- cGUCGUGaaa-GCUACCU-----UGuuGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 13469 0.7 0.99408
Target:  5'- gGUAGCGCcgUCGAcggucUGG-GCGACGgGGa -3'
miRNA:   3'- -CGUCGUGaaAGCU-----ACCuUGUUGCgCC- -5'
13970 3' -48.9 NC_003521.1 + 13875 0.71 0.988402
Target:  5'- gGCGGCGCcgccauggaUUUCGccggGGGGCccGGCGCGGa -3'
miRNA:   3'- -CGUCGUG---------AAAGCua--CCUUG--UUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 14943 0.7 0.994885
Target:  5'- gGCAGCGCcagacgCGcAUGGAGCAcCGCa- -3'
miRNA:   3'- -CGUCGUGaaa---GC-UACCUUGUuGCGcc -5'
13970 3' -48.9 NC_003521.1 + 15053 0.68 0.998647
Target:  5'- aGCGGCGCgagCGc--GAGCGGCGCGu -3'
miRNA:   3'- -CGUCGUGaaaGCuacCUUGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 16516 0.67 0.999744
Target:  5'- uGCGGCGCUcggcUCGGcUGGAGCGcaacggacccuGCGUGc -3'
miRNA:   3'- -CGUCGUGAa---AGCU-ACCUUGU-----------UGCGCc -5'
13970 3' -48.9 NC_003521.1 + 17001 0.7 0.99623
Target:  5'- aGCAgGCGCccgCGGUGGcGGCGGCGCaGGc -3'
miRNA:   3'- -CGU-CGUGaaaGCUACC-UUGUUGCG-CC- -5'
13970 3' -48.9 NC_003521.1 + 17157 0.68 0.998647
Target:  5'- aGCGGCGCgaggcCGA-GGcGCAGCGCuGGc -3'
miRNA:   3'- -CGUCGUGaaa--GCUaCCuUGUUGCG-CC- -5'
13970 3' -48.9 NC_003521.1 + 17461 0.68 0.999077
Target:  5'- gGCAGCGC--UCGGaGGAGaGACGaCGGc -3'
miRNA:   3'- -CGUCGUGaaAGCUaCCUUgUUGC-GCC- -5'
13970 3' -48.9 NC_003521.1 + 17494 0.67 0.999793
Target:  5'- aGCGGCGCcgcCGGUcacGGcgguucccggcccGGCGGCGCGGg -3'
miRNA:   3'- -CGUCGUGaaaGCUA---CC-------------UUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 19039 0.75 0.936961
Target:  5'- aGCGGaCGCUggagcUUCGA-GGAcgGCGGCGCGGc -3'
miRNA:   3'- -CGUC-GUGA-----AAGCUaCCU--UGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 21164 0.69 0.998191
Target:  5'- cGgGGCugUUUCGAUGGucacuccgccgaGACGCGu -3'
miRNA:   3'- -CgUCGugAAAGCUACCuug---------UUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 21285 0.66 0.999944
Target:  5'- -gAGCGCUUcgCGGucUGGcugcGCGugGCGGu -3'
miRNA:   3'- cgUCGUGAAa-GCU--ACCu---UGUugCGCC- -5'
13970 3' -48.9 NC_003521.1 + 21938 0.67 0.999501
Target:  5'- gGCGGC-C--UCGGgcUGGAGCAgugggcgaGCGCGGc -3'
miRNA:   3'- -CGUCGuGaaAGCU--ACCUUGU--------UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 24222 0.68 0.999243
Target:  5'- aGCAGCACcagCGGguuGGGCAGCggGCGGu -3'
miRNA:   3'- -CGUCGUGaaaGCUac-CUUGUUG--CGCC- -5'
13970 3' -48.9 NC_003521.1 + 26089 0.68 0.998836
Target:  5'- gGCGGCGCUgacCGAagcccagacaGACGACGCGGu -3'
miRNA:   3'- -CGUCGUGAaa-GCUacc-------UUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 26442 0.66 0.999841
Target:  5'- -gGGCGCUgUUCG-UGGccugcAACGGCGUGGc -3'
miRNA:   3'- cgUCGUGA-AAGCuACC-----UUGUUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.