miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 3' -48.9 NC_003521.1 + 208651 1.15 0.010242
Target:  5'- cGCAGCACUUUCGAUGGAACAACGCGGg -3'
miRNA:   3'- -CGUCGUGAAAGCUACCUUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 167582 0.88 0.351104
Target:  5'- uGCAGCGCgugUCGAUGGAgaGCGGCGCGc -3'
miRNA:   3'- -CGUCGUGaa-AGCUACCU--UGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 154298 0.77 0.883083
Target:  5'- gGCGGCACgg-CGuccgGGGcCGACGCGGg -3'
miRNA:   3'- -CGUCGUGaaaGCua--CCUuGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 110678 0.76 0.896728
Target:  5'- cGUAGCGC--UCGGUGGcGGCAGCgGCGGc -3'
miRNA:   3'- -CGUCGUGaaAGCUACC-UUGUUG-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 131114 0.75 0.921175
Target:  5'- gGCGGCGCggcugcCGGgaaGGGACAGCGCGa -3'
miRNA:   3'- -CGUCGUGaaa---GCUa--CCUUGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 19039 0.75 0.936961
Target:  5'- aGCGGaCGCUggagcUUCGA-GGAcgGCGGCGCGGc -3'
miRNA:   3'- -CGUC-GUGA-----AAGCUaCCU--UGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 197179 0.75 0.936961
Target:  5'- gGCAGgGCUggaggCGGUGGcgguccCAGCGCGGg -3'
miRNA:   3'- -CGUCgUGAaa---GCUACCuu----GUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 184195 0.75 0.941737
Target:  5'- uGguGCGCUucUUCGuggaccucUGGGACGugGCGGc -3'
miRNA:   3'- -CguCGUGA--AAGCu-------ACCUUGUugCGCC- -5'
13970 3' -48.9 NC_003521.1 + 30982 0.75 0.941737
Target:  5'- aGCAGCAgCUgcggaUCGGgaUGGGGCGACGaCGGc -3'
miRNA:   3'- -CGUCGU-GAa----AGCU--ACCUUGUUGC-GCC- -5'
13970 3' -48.9 NC_003521.1 + 96998 0.74 0.950568
Target:  5'- gGCGGCGCgcacgaucUCGcUGGggUuGCGCGGg -3'
miRNA:   3'- -CGUCGUGaa------AGCuACCuuGuUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 60688 0.74 0.962058
Target:  5'- uGCGGcCGCg--CGGgggacccgGGGGCGGCGCGGg -3'
miRNA:   3'- -CGUC-GUGaaaGCUa-------CCUUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 116681 0.74 0.962058
Target:  5'- gGCAGCgGCgg-CGGaGGcAGCGGCGCGGg -3'
miRNA:   3'- -CGUCG-UGaaaGCUaCC-UUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 212062 0.73 0.965436
Target:  5'- uGCAGCGCUagggCGGUGGcGCGgcccGCGCGc -3'
miRNA:   3'- -CGUCGUGAaa--GCUACCuUGU----UGCGCc -5'
13970 3' -48.9 NC_003521.1 + 129649 0.73 0.965436
Target:  5'- cGCGGCGCcgUCGccGGGGCGGCcgcgcuauGCGGa -3'
miRNA:   3'- -CGUCGUGaaAGCuaCCUUGUUG--------CGCC- -5'
13970 3' -48.9 NC_003521.1 + 74894 0.73 0.968902
Target:  5'- uGCuGCGCgagacgguggcggCGGUGGAgucggcccgGCAGCGCGGg -3'
miRNA:   3'- -CGuCGUGaaa----------GCUACCU---------UGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 133187 0.73 0.971547
Target:  5'- gGCGGC-CUcggCGAUcGGGACGAcCGCGGu -3'
miRNA:   3'- -CGUCGuGAaa-GCUA-CCUUGUU-GCGCC- -5'
13970 3' -48.9 NC_003521.1 + 98326 0.73 0.974027
Target:  5'- gGCGGcCACga-CGGUGGuugcgcuggcagaGACGACGCGGu -3'
miRNA:   3'- -CGUC-GUGaaaGCUACC-------------UUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 230413 0.73 0.974292
Target:  5'- cGCGGU--UUUUGAgaugcGGGGCGACGCGGu -3'
miRNA:   3'- -CGUCGugAAAGCUa----CCUUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 31711 0.73 0.974292
Target:  5'- gGCAGCAUgugcgCGugcUGGGACGcCGCGGc -3'
miRNA:   3'- -CGUCGUGaaa--GCu--ACCUUGUuGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 46024 0.73 0.974292
Target:  5'- aGCAGCACcg-UGAaGGGccACAugGCGGc -3'
miRNA:   3'- -CGUCGUGaaaGCUaCCU--UGUugCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.