miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 3' -48.9 NC_003521.1 + 169081 0.72 0.979197
Target:  5'- uGCGGCACgaccaCGAUGGuGCggUGCGu -3'
miRNA:   3'- -CGUCGUGaaa--GCUACCuUGuuGCGCc -5'
13970 3' -48.9 NC_003521.1 + 5302 0.72 0.979197
Target:  5'- cCGGCAUgUUUCGcgGGGGCGGCGUGc -3'
miRNA:   3'- cGUCGUG-AAAGCuaCCUUGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 59390 0.72 0.980737
Target:  5'- cGCAGCACUUguaCGAccaccUGGAgaaguucguggcacGCGACaGCGGc -3'
miRNA:   3'- -CGUCGUGAAa--GCU-----ACCU--------------UGUUG-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 152411 0.72 0.981371
Target:  5'- cGCAGCGCcUUCG-UGcAAgAGCGCGGc -3'
miRNA:   3'- -CGUCGUGaAAGCuACcUUgUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 127396 0.72 0.98337
Target:  5'- gGCGGcCACaggCGGUGGucguGCAGCGCGu -3'
miRNA:   3'- -CGUC-GUGaaaGCUACCu---UGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 120776 0.72 0.98337
Target:  5'- aGgGGCACUgcgCGGUGGGcgAGCGCGa -3'
miRNA:   3'- -CgUCGUGAaa-GCUACCUugUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 161222 0.72 0.98337
Target:  5'- cCGGCAagUUCGAUGGcGGCGGCaGCGGc -3'
miRNA:   3'- cGUCGUgaAAGCUACC-UUGUUG-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 98402 0.72 0.98467
Target:  5'- gGCGGCGCUgcugcuguuauugucCGGUGGuGGCGGgGCGGg -3'
miRNA:   3'- -CGUCGUGAaa-------------GCUACC-UUGUUgCGCC- -5'
13970 3' -48.9 NC_003521.1 + 180926 0.72 0.985203
Target:  5'- uGCGGC-CgcUCGAUGGu--GGCGCGGu -3'
miRNA:   3'- -CGUCGuGaaAGCUACCuugUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 135786 0.72 0.985203
Target:  5'- aGUGGCGCUgcgggaGGaGGAGCAGCgGCGGa -3'
miRNA:   3'- -CGUCGUGAaag---CUaCCUUGUUG-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 167426 0.72 0.985203
Target:  5'- gGCGGCGCagcaGGUGGAugAACuCGGa -3'
miRNA:   3'- -CGUCGUGaaagCUACCUugUUGcGCC- -5'
13970 3' -48.9 NC_003521.1 + 217639 0.71 0.986877
Target:  5'- uCGGCGUggUCGG-GGGGCAugGCGGg -3'
miRNA:   3'- cGUCGUGaaAGCUaCCUUGUugCGCC- -5'
13970 3' -48.9 NC_003521.1 + 13875 0.71 0.988402
Target:  5'- gGCGGCGCcgccauggaUUUCGccggGGGGCccGGCGCGGa -3'
miRNA:   3'- -CGUCGUG---------AAAGCua--CCUUG--UUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 153894 0.71 0.988402
Target:  5'- cCAGCGCg--CGGUaggGGAACAGCGCc- -3'
miRNA:   3'- cGUCGUGaaaGCUA---CCUUGUUGCGcc -5'
13970 3' -48.9 NC_003521.1 + 120738 0.71 0.989786
Target:  5'- cGCAGCACgacaCGGUGGAcCGACGg-- -3'
miRNA:   3'- -CGUCGUGaaa-GCUACCUuGUUGCgcc -5'
13970 3' -48.9 NC_003521.1 + 155098 0.71 0.989786
Target:  5'- cGCGGCGCUgca---GGAGCAggGCGUGGa -3'
miRNA:   3'- -CGUCGUGAaagcuaCCUUGU--UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 239444 0.71 0.990675
Target:  5'- aGCAGCGCgggcucggggacagCGGUGGcccGCGGCGCGu -3'
miRNA:   3'- -CGUCGUGaaa-----------GCUACCu--UGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 39216 0.71 0.990675
Target:  5'- aGCAGCGCgggcucggggacagCGGUGGcccGCGGCGCGu -3'
miRNA:   3'- -CGUCGUGaaa-----------GCUACCu--UGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 111818 0.71 0.991037
Target:  5'- gGCGGCGCcagCGAgaucUGGAGCGugGUGc -3'
miRNA:   3'- -CGUCGUGaaaGCU----ACCUUGUugCGCc -5'
13970 3' -48.9 NC_003521.1 + 128847 0.71 0.991037
Target:  5'- -uGGUGCggUUGAgcaGGAACAGCGUGGc -3'
miRNA:   3'- cgUCGUGaaAGCUa--CCUUGUUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.