Results 21 - 40 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13970 | 3' | -48.9 | NC_003521.1 | + | 63114 | 0.71 | 0.992056 |
Target: 5'- aGCAGUACcagCagauggucagccaGAUGGAGCAgcagcuGCGCGGg -3' miRNA: 3'- -CGUCGUGaaaG-------------CUACCUUGU------UGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 133368 | 0.71 | 0.991037 |
Target: 5'- uCAGCACggucCGccGGcACAGCGCGGc -3' miRNA: 3'- cGUCGUGaaa-GCuaCCuUGUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 169081 | 0.72 | 0.979197 |
Target: 5'- uGCGGCACgaccaCGAUGGuGCggUGCGu -3' miRNA: 3'- -CGUCGUGaaa--GCUACCuUGuuGCGCc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 31711 | 0.73 | 0.974292 |
Target: 5'- gGCAGCAUgugcgCGugcUGGGACGcCGCGGc -3' miRNA: 3'- -CGUCGUGaaa--GCu--ACCUUGUuGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 133187 | 0.73 | 0.971547 |
Target: 5'- gGCGGC-CUcggCGAUcGGGACGAcCGCGGu -3' miRNA: 3'- -CGUCGuGAaa-GCUA-CCUUGUU-GCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 60688 | 0.74 | 0.962058 |
Target: 5'- uGCGGcCGCg--CGGgggacccgGGGGCGGCGCGGg -3' miRNA: 3'- -CGUC-GUGaaaGCUa-------CCUUGUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 30982 | 0.75 | 0.941737 |
Target: 5'- aGCAGCAgCUgcggaUCGGgaUGGGGCGACGaCGGc -3' miRNA: 3'- -CGUCGU-GAa----AGCU--ACCUUGUUGC-GCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 197179 | 0.75 | 0.936961 |
Target: 5'- gGCAGgGCUggaggCGGUGGcgguccCAGCGCGGg -3' miRNA: 3'- -CGUCgUGAaa---GCUACCuu----GUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 19039 | 0.75 | 0.936961 |
Target: 5'- aGCGGaCGCUggagcUUCGA-GGAcgGCGGCGCGGc -3' miRNA: 3'- -CGUC-GUGA-----AAGCUaCCU--UGUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 131114 | 0.75 | 0.921175 |
Target: 5'- gGCGGCGCggcugcCGGgaaGGGACAGCGCGa -3' miRNA: 3'- -CGUCGUGaaa---GCUa--CCUUGUUGCGCc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 59390 | 0.72 | 0.980737 |
Target: 5'- cGCAGCACUUguaCGAccaccUGGAgaaguucguggcacGCGACaGCGGc -3' miRNA: 3'- -CGUCGUGAAa--GCU-----ACCU--------------UGUUG-CGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 127396 | 0.72 | 0.98337 |
Target: 5'- gGCGGcCACaggCGGUGGucguGCAGCGCGu -3' miRNA: 3'- -CGUC-GUGaaaGCUACCu---UGUUGCGCc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 128847 | 0.71 | 0.991037 |
Target: 5'- -uGGUGCggUUGAgcaGGAACAGCGUGGc -3' miRNA: 3'- cgUCGUGaaAGCUa--CCUUGUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 111818 | 0.71 | 0.991037 |
Target: 5'- gGCGGCGCcagCGAgaucUGGAGCGugGUGc -3' miRNA: 3'- -CGUCGUGaaaGCU----ACCUUGUugCGCc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 239444 | 0.71 | 0.990675 |
Target: 5'- aGCAGCGCgggcucggggacagCGGUGGcccGCGGCGCGu -3' miRNA: 3'- -CGUCGUGaaa-----------GCUACCu--UGUUGCGCc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 153894 | 0.71 | 0.988402 |
Target: 5'- cCAGCGCg--CGGUaggGGAACAGCGCc- -3' miRNA: 3'- cGUCGUGaaaGCUA---CCUUGUUGCGcc -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 217639 | 0.71 | 0.986877 |
Target: 5'- uCGGCGUggUCGG-GGGGCAugGCGGg -3' miRNA: 3'- cGUCGUGaaAGCUaCCUUGUugCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 180926 | 0.72 | 0.985203 |
Target: 5'- uGCGGC-CgcUCGAUGGu--GGCGCGGu -3' miRNA: 3'- -CGUCGuGaaAGCUACCuugUUGCGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 135786 | 0.72 | 0.985203 |
Target: 5'- aGUGGCGCUgcgggaGGaGGAGCAGCgGCGGa -3' miRNA: 3'- -CGUCGUGAaag---CUaCCUUGUUG-CGCC- -5' |
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13970 | 3' | -48.9 | NC_003521.1 | + | 98402 | 0.72 | 0.98467 |
Target: 5'- gGCGGCGCUgcugcuguuauugucCGGUGGuGGCGGgGCGGg -3' miRNA: 3'- -CGUCGUGAaa-------------GCUACC-UUGUUgCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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