miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 3' -48.9 NC_003521.1 + 63114 0.71 0.992056
Target:  5'- aGCAGUACcagCagauggucagccaGAUGGAGCAgcagcuGCGCGGg -3'
miRNA:   3'- -CGUCGUGaaaG-------------CUACCUUGU------UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 135786 0.72 0.985203
Target:  5'- aGUGGCGCUgcgggaGGaGGAGCAGCgGCGGa -3'
miRNA:   3'- -CGUCGUGAaag---CUaCCUUGUUG-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 180926 0.72 0.985203
Target:  5'- uGCGGC-CgcUCGAUGGu--GGCGCGGu -3'
miRNA:   3'- -CGUCGuGaaAGCUACCuugUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 217639 0.71 0.986877
Target:  5'- uCGGCGUggUCGG-GGGGCAugGCGGg -3'
miRNA:   3'- cGUCGUGaaAGCUaCCUUGUugCGCC- -5'
13970 3' -48.9 NC_003521.1 + 153894 0.71 0.988402
Target:  5'- cCAGCGCg--CGGUaggGGAACAGCGCc- -3'
miRNA:   3'- cGUCGUGaaaGCUA---CCUUGUUGCGcc -5'
13970 3' -48.9 NC_003521.1 + 239444 0.71 0.990675
Target:  5'- aGCAGCGCgggcucggggacagCGGUGGcccGCGGCGCGu -3'
miRNA:   3'- -CGUCGUGaaa-----------GCUACCu--UGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 111818 0.71 0.991037
Target:  5'- gGCGGCGCcagCGAgaucUGGAGCGugGUGc -3'
miRNA:   3'- -CGUCGUGaaaGCU----ACCUUGUugCGCc -5'
13970 3' -48.9 NC_003521.1 + 128847 0.71 0.991037
Target:  5'- -uGGUGCggUUGAgcaGGAACAGCGUGGc -3'
miRNA:   3'- cgUCGUGaaAGCUa--CCUUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 133368 0.71 0.991037
Target:  5'- uCAGCACggucCGccGGcACAGCGCGGc -3'
miRNA:   3'- cGUCGUGaaa-GCuaCCuUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 98402 0.72 0.98467
Target:  5'- gGCGGCGCUgcugcuguuauugucCGGUGGuGGCGGgGCGGg -3'
miRNA:   3'- -CGUCGUGAaa-------------GCUACC-UUGUUgCGCC- -5'
13970 3' -48.9 NC_003521.1 + 127396 0.72 0.98337
Target:  5'- gGCGGcCACaggCGGUGGucguGCAGCGCGu -3'
miRNA:   3'- -CGUC-GUGaaaGCUACCu---UGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 59390 0.72 0.980737
Target:  5'- cGCAGCACUUguaCGAccaccUGGAgaaguucguggcacGCGACaGCGGc -3'
miRNA:   3'- -CGUCGUGAAa--GCU-----ACCU--------------UGUUG-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 131114 0.75 0.921175
Target:  5'- gGCGGCGCggcugcCGGgaaGGGACAGCGCGa -3'
miRNA:   3'- -CGUCGUGaaa---GCUa--CCUUGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 19039 0.75 0.936961
Target:  5'- aGCGGaCGCUggagcUUCGA-GGAcgGCGGCGCGGc -3'
miRNA:   3'- -CGUC-GUGA-----AAGCUaCCU--UGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 197179 0.75 0.936961
Target:  5'- gGCAGgGCUggaggCGGUGGcgguccCAGCGCGGg -3'
miRNA:   3'- -CGUCgUGAaa---GCUACCuu----GUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 30982 0.75 0.941737
Target:  5'- aGCAGCAgCUgcggaUCGGgaUGGGGCGACGaCGGc -3'
miRNA:   3'- -CGUCGU-GAa----AGCU--ACCUUGUUGC-GCC- -5'
13970 3' -48.9 NC_003521.1 + 60688 0.74 0.962058
Target:  5'- uGCGGcCGCg--CGGgggacccgGGGGCGGCGCGGg -3'
miRNA:   3'- -CGUC-GUGaaaGCUa-------CCUUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 133187 0.73 0.971547
Target:  5'- gGCGGC-CUcggCGAUcGGGACGAcCGCGGu -3'
miRNA:   3'- -CGUCGuGAaa-GCUA-CCUUGUU-GCGCC- -5'
13970 3' -48.9 NC_003521.1 + 31711 0.73 0.974292
Target:  5'- gGCAGCAUgugcgCGugcUGGGACGcCGCGGc -3'
miRNA:   3'- -CGUCGUGaaa--GCu--ACCUUGUuGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 169081 0.72 0.979197
Target:  5'- uGCGGCACgaccaCGAUGGuGCggUGCGu -3'
miRNA:   3'- -CGUCGUGaaa--GCUACCuUGuuGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.