miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 3' -48.9 NC_003521.1 + 208651 1.15 0.010242
Target:  5'- cGCAGCACUUUCGAUGGAACAACGCGGg -3'
miRNA:   3'- -CGUCGUGAAAGCUACCUUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 13875 0.71 0.988402
Target:  5'- gGCGGCGCcgccauggaUUUCGccggGGGGCccGGCGCGGa -3'
miRNA:   3'- -CGUCGUG---------AAAGCua--CCUUG--UUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 155098 0.71 0.989786
Target:  5'- cGCGGCGCUgca---GGAGCAggGCGUGGa -3'
miRNA:   3'- -CGUCGUGAaagcuaCCUUGU--UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 142984 0.66 0.999944
Target:  5'- uUAGCACUUUuaaacuuagCGAUGGccCAAagGCGGa -3'
miRNA:   3'- cGUCGUGAAA---------GCUACCuuGUUg-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 96998 0.74 0.950568
Target:  5'- gGCGGCGCgcacgaucUCGcUGGggUuGCGCGGg -3'
miRNA:   3'- -CGUCGUGaa------AGCuACCuuGuUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 116681 0.74 0.962058
Target:  5'- gGCAGCgGCgg-CGGaGGcAGCGGCGCGGg -3'
miRNA:   3'- -CGUCG-UGaaaGCUaCC-UUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 129649 0.73 0.965436
Target:  5'- cGCGGCGCcgUCGccGGGGCGGCcgcgcuauGCGGa -3'
miRNA:   3'- -CGUCGUGaaAGCuaCCUUGUUG--------CGCC- -5'
13970 3' -48.9 NC_003521.1 + 74894 0.73 0.968902
Target:  5'- uGCuGCGCgagacgguggcggCGGUGGAgucggcccgGCAGCGCGGg -3'
miRNA:   3'- -CGuCGUGaaa----------GCUACCU---------UGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 230413 0.73 0.974292
Target:  5'- cGCGGU--UUUUGAgaugcGGGGCGACGCGGu -3'
miRNA:   3'- -CGUCGugAAAGCUa----CCUUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 167426 0.72 0.985203
Target:  5'- gGCGGCGCagcaGGUGGAugAACuCGGa -3'
miRNA:   3'- -CGUCGUGaaagCUACCUugUUGcGCC- -5'
13970 3' -48.9 NC_003521.1 + 152411 0.72 0.981371
Target:  5'- cGCAGCGCcUUCG-UGcAAgAGCGCGGc -3'
miRNA:   3'- -CGUCGUGaAAGCuACcUUgUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 46024 0.73 0.974292
Target:  5'- aGCAGCACcg-UGAaGGGccACAugGCGGc -3'
miRNA:   3'- -CGUCGUGaaaGCUaCCU--UGUugCGCC- -5'
13970 3' -48.9 NC_003521.1 + 167582 0.88 0.351104
Target:  5'- uGCAGCGCgugUCGAUGGAgaGCGGCGCGc -3'
miRNA:   3'- -CGUCGUGaa-AGCUACCU--UGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 120776 0.72 0.98337
Target:  5'- aGgGGCACUgcgCGGUGGGcgAGCGCGa -3'
miRNA:   3'- -CgUCGUGAaa-GCUACCUugUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 110678 0.76 0.896728
Target:  5'- cGUAGCGC--UCGGUGGcGGCAGCgGCGGc -3'
miRNA:   3'- -CGUCGUGaaAGCUACC-UUGUUG-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 98326 0.73 0.974027
Target:  5'- gGCGGcCACga-CGGUGGuugcgcuggcagaGACGACGCGGu -3'
miRNA:   3'- -CGUC-GUGaaaGCUACC-------------UUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 161222 0.72 0.98337
Target:  5'- cCGGCAagUUCGAUGGcGGCGGCaGCGGc -3'
miRNA:   3'- cGUCGUgaAAGCUACC-UUGUUG-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 120738 0.71 0.989786
Target:  5'- cGCAGCACgacaCGGUGGAcCGACGg-- -3'
miRNA:   3'- -CGUCGUGaaa-GCUACCUuGUUGCgcc -5'
13970 3' -48.9 NC_003521.1 + 184195 0.75 0.941737
Target:  5'- uGguGCGCUucUUCGuggaccucUGGGACGugGCGGc -3'
miRNA:   3'- -CguCGUGA--AAGCu-------ACCUUGUugCGCC- -5'
13970 3' -48.9 NC_003521.1 + 212062 0.73 0.965436
Target:  5'- uGCAGCGCUagggCGGUGGcGCGgcccGCGCGc -3'
miRNA:   3'- -CGUCGUGAaa--GCUACCuUGU----UGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.