miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 3' -48.9 NC_003521.1 + 28255 0.67 0.999598
Target:  5'- aCGGCGCcga-GA-GGAACAGCgGCGGc -3'
miRNA:   3'- cGUCGUGaaagCUaCCUUGUUG-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 28837 0.66 0.999927
Target:  5'- uGCGGCGCcuggaCGAcgagcUGcGGCGGCGCGGc -3'
miRNA:   3'- -CGUCGUGaaa--GCU-----ACcUUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 30982 0.75 0.941737
Target:  5'- aGCAGCAgCUgcggaUCGGgaUGGGGCGACGaCGGc -3'
miRNA:   3'- -CGUCGU-GAa----AGCU--ACCUUGUUGC-GCC- -5'
13970 3' -48.9 NC_003521.1 + 31128 0.69 0.997269
Target:  5'- -gAGCGCcugUUCG-UGGAGCAGCGUu- -3'
miRNA:   3'- cgUCGUGa--AAGCuACCUUGUUGCGcc -5'
13970 3' -48.9 NC_003521.1 + 31711 0.73 0.974292
Target:  5'- gGCAGCAUgugcgCGugcUGGGACGcCGCGGc -3'
miRNA:   3'- -CGUCGUGaaa--GCu--ACCUUGUuGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 32111 0.66 0.999927
Target:  5'- gGCGGCGCggcugaucUCGGgcaGGuAGCGgGCGCGGu -3'
miRNA:   3'- -CGUCGUGaa------AGCUa--CC-UUGU-UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 32201 0.67 0.999744
Target:  5'- -gGGCAUggugggGAUGGcucGCAACGCGGc -3'
miRNA:   3'- cgUCGUGaaag--CUACCu--UGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 32369 0.68 0.998879
Target:  5'- aCGGgGCUUUUGGUGGcGCGugGCc- -3'
miRNA:   3'- cGUCgUGAAAGCUACCuUGUugCGcc -5'
13970 3' -48.9 NC_003521.1 + 36373 0.68 0.998879
Target:  5'- cGCGGCuucgcgugcuGCUUUCcgugcugcUGGcGGCAGCGCGGg -3'
miRNA:   3'- -CGUCG----------UGAAAGcu------ACC-UUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 39216 0.71 0.990675
Target:  5'- aGCAGCGCgggcucggggacagCGGUGGcccGCGGCGCGu -3'
miRNA:   3'- -CGUCGUGaaa-----------GCUACCu--UGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 39441 0.67 0.999598
Target:  5'- gGCGGCGCcg-UGGcucccgGGGACGGCaGCGGu -3'
miRNA:   3'- -CGUCGUGaaaGCUa-----CCUUGUUG-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 39540 0.67 0.999744
Target:  5'- aGCuGGCGCaggUCGGUGGcccCGACGcCGGc -3'
miRNA:   3'- -CG-UCGUGaa-AGCUACCuu-GUUGC-GCC- -5'
13970 3' -48.9 NC_003521.1 + 46024 0.73 0.974292
Target:  5'- aGCAGCACcg-UGAaGGGccACAugGCGGc -3'
miRNA:   3'- -CGUCGUGaaaGCUaCCU--UGUugCGCC- -5'
13970 3' -48.9 NC_003521.1 + 46378 0.69 0.997692
Target:  5'- cGCGGCugUgaggggCGcggggugcGUGGGGCG-CGCGGg -3'
miRNA:   3'- -CGUCGugAaa----GC--------UACCUUGUuGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 50596 0.67 0.999744
Target:  5'- uGCAGCcCg--UGAUGGGgucgACGACGCa- -3'
miRNA:   3'- -CGUCGuGaaaGCUACCU----UGUUGCGcc -5'
13970 3' -48.9 NC_003521.1 + 52284 0.66 0.999927
Target:  5'- aGCGGCG--UUC-AUGGugauGGCGACGUGGg -3'
miRNA:   3'- -CGUCGUgaAAGcUACC----UUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 55865 0.68 0.999371
Target:  5'- uGCAaaucGCGCccaaGAUGGGACGcuaccauGCGCGGu -3'
miRNA:   3'- -CGU----CGUGaaagCUACCUUGU-------UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 56302 0.67 0.999798
Target:  5'- -gAGUACUUgaccacgUGAUGGAugAagaccaccgagGCGCGGc -3'
miRNA:   3'- cgUCGUGAAa------GCUACCUugU-----------UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 56808 0.68 0.999243
Target:  5'- aCGGCACc-UCGGggugGGAACGucuaacccaccACGCGGc -3'
miRNA:   3'- cGUCGUGaaAGCUa---CCUUGU-----------UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 58783 0.68 0.998647
Target:  5'- gGCGGCGCg--CGccGGcGACGACGCa- -3'
miRNA:   3'- -CGUCGUGaaaGCuaCC-UUGUUGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.