miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 3' -48.9 NC_003521.1 + 176335 0.66 0.999907
Target:  5'- cGUAGCGCUUuaggcccugaUCGGUGGGcggguugucguaacuCAGCguGCGGa -3'
miRNA:   3'- -CGUCGUGAA----------AGCUACCUu--------------GUUG--CGCC- -5'
13970 3' -48.9 NC_003521.1 + 156885 0.66 0.999904
Target:  5'- gGCGGcCGCUgccCGAUGGcACGggggGCGaCGGg -3'
miRNA:   3'- -CGUC-GUGAaa-GCUACCuUGU----UGC-GCC- -5'
13970 3' -48.9 NC_003521.1 + 143037 0.66 0.999904
Target:  5'- gGCuAGCACcuuccgCGAccUGGAugGugGUGGu -3'
miRNA:   3'- -CG-UCGUGaaa---GCU--ACCUugUugCGCC- -5'
13970 3' -48.9 NC_003521.1 + 113843 0.66 0.999904
Target:  5'- aGCGGCAgCggggCGGccGGcgacGACGGCGCGGg -3'
miRNA:   3'- -CGUCGU-Gaaa-GCUa-CC----UUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 228033 0.66 0.999904
Target:  5'- uCGGCAUUgUCGGUGGcguuaAGCGGaGCGGu -3'
miRNA:   3'- cGUCGUGAaAGCUACC-----UUGUUgCGCC- -5'
13970 3' -48.9 NC_003521.1 + 92376 0.66 0.999902
Target:  5'- uCAGCACgcacCGGccaccccUGGAGCcgccGGCGCGGc -3'
miRNA:   3'- cGUCGUGaaa-GCU-------ACCUUG----UUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 131054 0.66 0.999876
Target:  5'- gGCGGCGggccuCUggacgCGGUGGcGGCGAcCGCGGc -3'
miRNA:   3'- -CGUCGU-----GAaa---GCUACC-UUGUU-GCGCC- -5'
13970 3' -48.9 NC_003521.1 + 145485 0.66 0.999876
Target:  5'- cGCA-CGCUgcaGGUGGAGCccuGCGCGc -3'
miRNA:   3'- -CGUcGUGAaagCUACCUUGu--UGCGCc -5'
13970 3' -48.9 NC_003521.1 + 99617 0.66 0.999876
Target:  5'- uGCAGCGCc--CGgcGGcGCAGCGCc- -3'
miRNA:   3'- -CGUCGUGaaaGCuaCCuUGUUGCGcc -5'
13970 3' -48.9 NC_003521.1 + 108771 0.66 0.999876
Target:  5'- uGCAGC----UUGA-GGGGCAgACGCGGa -3'
miRNA:   3'- -CGUCGugaaAGCUaCCUUGU-UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 160313 0.66 0.999876
Target:  5'- -gGGCACggccaUCGGagccgUGG-GCGGCGCGGu -3'
miRNA:   3'- cgUCGUGaa---AGCU-----ACCuUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 128184 0.66 0.999876
Target:  5'- uGCAGCACcg--GGUGGcACAGCGUc- -3'
miRNA:   3'- -CGUCGUGaaagCUACCuUGUUGCGcc -5'
13970 3' -48.9 NC_003521.1 + 96874 0.66 0.999873
Target:  5'- gGUAGCACUcgcgcagcCGGUGcGAGCAguuggggAUGCGGc -3'
miRNA:   3'- -CGUCGUGAaa------GCUAC-CUUGU-------UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 75456 0.66 0.999841
Target:  5'- uGCAGCGCaagaUCGAcgagaUGGAcauccccaACGACGUGa -3'
miRNA:   3'- -CGUCGUGaa--AGCU-----ACCU--------UGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 224781 0.66 0.999841
Target:  5'- aGCAGCGCccgcaccacgUCGugcGGGACGcGCGUGGc -3'
miRNA:   3'- -CGUCGUGaa--------AGCua-CCUUGU-UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 205379 0.66 0.999841
Target:  5'- cGCGGCA----UGAUGGAcuaucACGACGCa- -3'
miRNA:   3'- -CGUCGUgaaaGCUACCU-----UGUUGCGcc -5'
13970 3' -48.9 NC_003521.1 + 161107 0.66 0.999841
Target:  5'- gGCGGCGgUgguuuagUCGGgaauugcaGGAuCAACGCGGc -3'
miRNA:   3'- -CGUCGUgAa------AGCUa-------CCUuGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 114739 0.66 0.999841
Target:  5'- cCGGCACgc-CGugGGggUGGCGCGGc -3'
miRNA:   3'- cGUCGUGaaaGCuaCCuuGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 26442 0.66 0.999841
Target:  5'- -gGGCGCUgUUCG-UGGccugcAACGGCGUGGc -3'
miRNA:   3'- cgUCGUGA-AAGCuACC-----UUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 164210 0.66 0.999841
Target:  5'- gGCGGgGCgg-CGGUGGuAGCGGCGgcUGGa -3'
miRNA:   3'- -CGUCgUGaaaGCUACC-UUGUUGC--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.