miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 3' -48.9 NC_003521.1 + 239767 0.67 0.999744
Target:  5'- aGCuGGCGCaggUCGGUGGcccCGACGcCGGc -3'
miRNA:   3'- -CG-UCGUGaa-AGCUACCuu-GUUGC-GCC- -5'
13970 3' -48.9 NC_003521.1 + 239668 0.67 0.999598
Target:  5'- gGCGGCGCcg-UGGcucccgGGGACGGCaGCGGu -3'
miRNA:   3'- -CGUCGUGaaaGCUa-----CCUUGUUG-CGCC- -5'
13970 3' -48.9 NC_003521.1 + 239444 0.71 0.990675
Target:  5'- aGCAGCGCgggcucggggacagCGGUGGcccGCGGCGCGu -3'
miRNA:   3'- -CGUCGUGaaa-----------GCUACCu--UGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 237850 0.71 0.992164
Target:  5'- gGCAGC-CUUUCGGUGGuaccgggaGAgGGCGCu- -3'
miRNA:   3'- -CGUCGuGAAAGCUACC--------UUgUUGCGcc -5'
13970 3' -48.9 NC_003521.1 + 236111 0.68 0.999077
Target:  5'- -aGGUACg-UCGGUaGGAggaagaACGACGCGGg -3'
miRNA:   3'- cgUCGUGaaAGCUA-CCU------UGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 234133 0.67 0.999798
Target:  5'- aGCAGCGCUcgCGGgcgcaGGcccuGCAGCacgaGCGGg -3'
miRNA:   3'- -CGUCGUGAaaGCUa----CCu---UGUUG----CGCC- -5'
13970 3' -48.9 NC_003521.1 + 230413 0.73 0.974292
Target:  5'- cGCGGU--UUUUGAgaugcGGGGCGACGCGGu -3'
miRNA:   3'- -CGUCGugAAAGCUa----CCUUGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 228033 0.66 0.999904
Target:  5'- uCGGCAUUgUCGGUGGcguuaAGCGGaGCGGu -3'
miRNA:   3'- cGUCGUGAaAGCUACC-----UUGUUgCGCC- -5'
13970 3' -48.9 NC_003521.1 + 224781 0.66 0.999841
Target:  5'- aGCAGCGCccgcaccacgUCGugcGGGACGcGCGUGGc -3'
miRNA:   3'- -CGUCGUGaa--------AGCua-CCUUGU-UGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 222808 0.7 0.99408
Target:  5'- gGUAGCGCggcUCGGUGGuggaaAACGGCgucuGCGGg -3'
miRNA:   3'- -CGUCGUGaa-AGCUACC-----UUGUUG----CGCC- -5'
13970 3' -48.9 NC_003521.1 + 222762 0.67 0.999501
Target:  5'- aCGGcCACggcgUCGGUGGGGuCGGCGCa- -3'
miRNA:   3'- cGUC-GUGaa--AGCUACCUU-GUUGCGcc -5'
13970 3' -48.9 NC_003521.1 + 221239 0.7 0.99408
Target:  5'- aGUAGCACagcaGGUGGAcCGugGUGGu -3'
miRNA:   3'- -CGUCGUGaaagCUACCUuGUugCGCC- -5'
13970 3' -48.9 NC_003521.1 + 219466 0.67 0.999744
Target:  5'- uGCGGCACgagCGAccauAGCAGCGCGc -3'
miRNA:   3'- -CGUCGUGaaaGCUacc-UUGUUGCGCc -5'
13970 3' -48.9 NC_003521.1 + 217639 0.71 0.986877
Target:  5'- uCGGCGUggUCGG-GGGGCAugGCGGg -3'
miRNA:   3'- cGUCGUGaaAGCUaCCUUGUugCGCC- -5'
13970 3' -48.9 NC_003521.1 + 216434 0.68 0.998879
Target:  5'- cGCAGCACcUUCGcgGGGAaGACcagaGCGa -3'
miRNA:   3'- -CGUCGUGaAAGCuaCCUUgUUG----CGCc -5'
13970 3' -48.9 NC_003521.1 + 213513 0.68 0.998647
Target:  5'- cCAGCACauagUCGGU-GAGgAugGCGGg -3'
miRNA:   3'- cGUCGUGaa--AGCUAcCUUgUugCGCC- -5'
13970 3' -48.9 NC_003521.1 + 212888 0.7 0.994809
Target:  5'- cGCGGgCgACgggggugUCGGUGGAcucgaggACGGCGCGGu -3'
miRNA:   3'- -CGUC-G-UGaa-----AGCUACCU-------UGUUGCGCC- -5'
13970 3' -48.9 NC_003521.1 + 212062 0.73 0.965436
Target:  5'- uGCAGCGCUagggCGGUGGcGCGgcccGCGCGc -3'
miRNA:   3'- -CGUCGUGAaa--GCUACCuUGU----UGCGCc -5'
13970 3' -48.9 NC_003521.1 + 210417 0.67 0.999798
Target:  5'- cGCAGCGUggUCGgcGuGGGCGGCGaCGGc -3'
miRNA:   3'- -CGUCGUGaaAGCuaC-CUUGUUGC-GCC- -5'
13970 3' -48.9 NC_003521.1 + 209591 0.66 0.999927
Target:  5'- cGCGuuCGCUUUaCGGUGGAcgGCuuCGUGGa -3'
miRNA:   3'- -CGUc-GUGAAA-GCUACCU--UGuuGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.