miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 187442 0.71 0.384551
Target:  5'- aGCUGCagaagcUGGUGCGCCGCGUCaGCg- -3'
miRNA:   3'- gCGGCGa-----ACCACGUGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 187410 0.74 0.279743
Target:  5'- cCGCUGCUcGGUgGCGcCCGaCGCCCGCa- -3'
miRNA:   3'- -GCGGCGAaCCA-CGU-GGC-GCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 185743 0.66 0.681974
Target:  5'- uCGCCGagcgGGUGCGCCggaGCGCcuaggggCCGCg- -3'
miRNA:   3'- -GCGGCgaa-CCACGUGG---CGCG-------GGCGau -5'
13970 5' -62.8 NC_003521.1 + 185094 0.66 0.701853
Target:  5'- cCGCgCGC-UGGgagGCGCUGCGCgCCGaCa- -3'
miRNA:   3'- -GCG-GCGaACCa--CGUGGCGCG-GGC-Gau -5'
13970 5' -62.8 NC_003521.1 + 184169 0.69 0.530692
Target:  5'- gCGCgaGCgggaGGUGCACCG-GCCCGUg- -3'
miRNA:   3'- -GCGg-CGaa--CCACGUGGCgCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 182263 0.66 0.682925
Target:  5'- aGCCGUgaUUGGcuugagGUACUGCguGCCCGCg- -3'
miRNA:   3'- gCGGCG--AACCa-----CGUGGCG--CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 180929 0.66 0.682925
Target:  5'- gGCCGCUcgaUGGUgGCGCgGUGCcguaguCCGCg- -3'
miRNA:   3'- gCGGCGA---ACCA-CGUGgCGCG------GGCGau -5'
13970 5' -62.8 NC_003521.1 + 180112 0.67 0.654274
Target:  5'- aGCgGCgUGGUGCGacCCGCG-CCGCc- -3'
miRNA:   3'- gCGgCGaACCACGU--GGCGCgGGCGau -5'
13970 5' -62.8 NC_003521.1 + 179215 0.66 0.701853
Target:  5'- cCGuCCG-UUGGaGCGCUGCGCCCcCUGc -3'
miRNA:   3'- -GC-GGCgAACCaCGUGGCGCGGGcGAU- -5'
13970 5' -62.8 NC_003521.1 + 176802 0.69 0.530692
Target:  5'- gGUCGa-UGGUGCGCUccaGCGCCUGCa- -3'
miRNA:   3'- gCGGCgaACCACGUGG---CGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 176052 0.7 0.476299
Target:  5'- aGgCGCUUGGgaucgcccgGUGCCGCGCCgGCc- -3'
miRNA:   3'- gCgGCGAACCa--------CGUGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 173007 0.66 0.717782
Target:  5'- uGCCGCUgcacgcggaugcuuUGGaGCA-CGCGCUCGCc- -3'
miRNA:   3'- gCGGCGA--------------ACCaCGUgGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 171528 0.66 0.692411
Target:  5'- gCGCCGCccugugucgGG-GCugCGCGCUgGUUAa -3'
miRNA:   3'- -GCGGCGaa-------CCaCGugGCGCGGgCGAU- -5'
13970 5' -62.8 NC_003521.1 + 171404 0.67 0.624521
Target:  5'- -aCCGUggUGGUGCGcgccgucaccgucCCGCGUCUGCUGc -3'
miRNA:   3'- gcGGCGa-ACCACGU-------------GGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 171195 0.69 0.530692
Target:  5'- aCGCCGagcUGGUGCACUGCucGCuCUGCg- -3'
miRNA:   3'- -GCGGCga-ACCACGUGGCG--CG-GGCGau -5'
13970 5' -62.8 NC_003521.1 + 170804 0.66 0.711244
Target:  5'- uGuCCGCguuaccUGGUacCGCUGCGCUCGCUGg -3'
miRNA:   3'- gC-GGCGa-----ACCAc-GUGGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 170730 0.67 0.606298
Target:  5'- aCGCCgGCcaGGUGCcCUGCGgcaaCCCGCUGu -3'
miRNA:   3'- -GCGG-CGaaCCACGuGGCGC----GGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 169518 0.66 0.700911
Target:  5'- cCGCCGCcccaggugcUGGUGCcccaggggcccguGCCGCGgccCCCGCc- -3'
miRNA:   3'- -GCGGCGa--------ACCACG-------------UGGCGC---GGGCGau -5'
13970 5' -62.8 NC_003521.1 + 167220 0.67 0.614925
Target:  5'- gCGCCGCaucUUGGUGUAgggcgccagguCCucguucaugaccaGCGCCCGCa- -3'
miRNA:   3'- -GCGGCG---AACCACGU-----------GG-------------CGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 164426 0.76 0.20364
Target:  5'- cCGCCGC-UGGUGCuagcagcgccACCGCGgCCGCg- -3'
miRNA:   3'- -GCGGCGaACCACG----------UGGCGCgGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.