miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 214309 0.67 0.994258
Target:  5'- uGGCuc-CGUgccucuugugCCAAGCAgucucucucgaucCGCCGUGGa -3'
miRNA:   3'- gCCGuuuGCAa---------GGUUCGU-------------GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 213462 0.67 0.992522
Target:  5'- aGGCGucgcacgucauGACGgcgCCGGuGCACGCCAUccacaGGg -3'
miRNA:   3'- gCCGU-----------UUGCaa-GGUU-CGUGCGGUA-----CC- -5'
13971 3' -51.8 NC_003521.1 + 213029 0.7 0.967198
Target:  5'- gGGCGAGCcggCCGAGCGgGCCGg-- -3'
miRNA:   3'- gCCGUUUGcaaGGUUCGUgCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 211451 0.69 0.975593
Target:  5'- uCGGCcucGCGgUCgGGGCAgGCCAUGa -3'
miRNA:   3'- -GCCGuu-UGCaAGgUUCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 210176 0.67 0.993481
Target:  5'- aGGCGccauGACGag-CAGGCGCGCCGccggUGGc -3'
miRNA:   3'- gCCGU----UUGCaagGUUCGUGCGGU----ACC- -5'
13971 3' -51.8 NC_003521.1 + 209565 0.66 0.998125
Target:  5'- gCGGCGAcggugGCGggggUCCGGGgGCGCaCGUagcGGa -3'
miRNA:   3'- -GCCGUU-----UGCa---AGGUUCgUGCG-GUA---CC- -5'
13971 3' -51.8 NC_003521.1 + 208565 0.66 0.996909
Target:  5'- aCGGCAAguAUGacaUCCGGGCcugACGCUcgaGUGGg -3'
miRNA:   3'- -GCCGUU--UGCa--AGGUUCG---UGCGG---UACC- -5'
13971 3' -51.8 NC_003521.1 + 208490 1.11 0.00915
Target:  5'- cCGGCAAACGUUCCAAGCACGCCAUGGu -3'
miRNA:   3'- -GCCGUUUGCAAGGUUCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 206957 0.66 0.997372
Target:  5'- aCGGCGAugagcccgugGCGUUCCAcgaAGCgaaugACGCCccaGGc -3'
miRNA:   3'- -GCCGUU----------UGCAAGGU---UCG-----UGCGGua-CC- -5'
13971 3' -51.8 NC_003521.1 + 205139 0.66 0.998125
Target:  5'- uGGUGAACcaGggCCGGGUG-GCCGUGGa -3'
miRNA:   3'- gCCGUUUG--CaaGGUUCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 204791 0.66 0.996909
Target:  5'- aCGGCGAAgaGggCCAAG-ACgGUCGUGGg -3'
miRNA:   3'- -GCCGUUUg-CaaGGUUCgUG-CGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 204623 0.68 0.988957
Target:  5'- uGGCGAcaGCGUUugagccgcucggCCAggugcgugGGCACGCCGUccGGg -3'
miRNA:   3'- gCCGUU--UGCAA------------GGU--------UCGUGCGGUA--CC- -5'
13971 3' -51.8 NC_003521.1 + 204310 0.68 0.990268
Target:  5'- cCGGCGggUGa-CCGcAGUccgACGCCAUGGu -3'
miRNA:   3'- -GCCGUuuGCaaGGU-UCG---UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 202488 0.77 0.707197
Target:  5'- cCGGCGAACGUUCCuaaaACGCCAUc- -3'
miRNA:   3'- -GCCGUUUGCAAGGuucgUGCGGUAcc -5'
13971 3' -51.8 NC_003521.1 + 202413 0.68 0.984191
Target:  5'- cCGGUGAAaag-CCAGGCGCaacCCAUGGg -3'
miRNA:   3'- -GCCGUUUgcaaGGUUCGUGc--GGUACC- -5'
13971 3' -51.8 NC_003521.1 + 200885 0.68 0.985927
Target:  5'- aGGC-AACGUacgCuCAGGCcgACGCCAUGa -3'
miRNA:   3'- gCCGuUUGCAa--G-GUUCG--UGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 200502 0.75 0.810802
Target:  5'- uGGCGGcGCGcaCCGAGCugGCCAaGGg -3'
miRNA:   3'- gCCGUU-UGCaaGGUUCGugCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 200385 0.67 0.992522
Target:  5'- gGGCuaGAGCGcg-CGAGCACcugGCCGUGGu -3'
miRNA:   3'- gCCG--UUUGCaagGUUCGUG---CGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 198209 0.68 0.985927
Target:  5'- uGGCGgcGACGgcgCCGccGGCG-GCCGUGGu -3'
miRNA:   3'- gCCGU--UUGCaa-GGU--UCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 197472 0.68 0.988957
Target:  5'- uGGCGGAUGUUCaCGcgcGGCGgGCCGgacGGc -3'
miRNA:   3'- gCCGUUUGCAAG-GU---UCGUgCGGUa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.