miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 3' -55.2 NC_003521.1 + 69746 0.66 0.979052
Target:  5'- -cGGGGAgGCggCGGUGGCacaagugcaugaucgGACGGGCGa -3'
miRNA:   3'- uaCCUCU-CGa-GCUACUG---------------CUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 50828 0.66 0.978163
Target:  5'- gGUGGuGGGagCGGUGACGGCGgcuuuuugagaaGGUGGa -3'
miRNA:   3'- -UACCuCUCgaGCUACUGCUGC------------UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 212364 0.66 0.978163
Target:  5'- cUGGuGcaccgcccaaGGCUgGAUGGCGACGAagagccacagcaGCGGu -3'
miRNA:   3'- uACCuC----------UCGAgCUACUGCUGCU------------CGCC- -5'
13972 3' -55.2 NC_003521.1 + 46402 0.66 0.978163
Target:  5'- cGUGGGGcGCgCGGgccaggaagcGGCGACGGGCGa -3'
miRNA:   3'- -UACCUCuCGaGCUa---------CUGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 46339 0.66 0.978163
Target:  5'- -aGGAGGGCgcgUCGucgGACGA-GGGCGa -3'
miRNA:   3'- uaCCUCUCG---AGCua-CUGCUgCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 99183 0.66 0.978163
Target:  5'- uGUGGcugAGGGUcacgUCGGUGACGGCc-GCGGc -3'
miRNA:   3'- -UACC---UCUCG----AGCUACUGCUGcuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 26039 0.66 0.978163
Target:  5'- gGUGaAGAGgaCG---GCGGCGAGCGGg -3'
miRNA:   3'- -UACcUCUCgaGCuacUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 17053 0.66 0.975819
Target:  5'- -cGGuaacGGCgccgacagCGAgGACGACGAGUGGg -3'
miRNA:   3'- uaCCuc--UCGa-------GCUaCUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 197285 0.66 0.975575
Target:  5'- -cGGGGAGCggGAgGGCGGCucgacgggagaggGGGCGGc -3'
miRNA:   3'- uaCCUCUCGagCUaCUGCUG-------------CUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 46786 0.66 0.974327
Target:  5'- -cGGAGGGCagaUCGGUGAacaugcccauggguaUGACGccGGUGGg -3'
miRNA:   3'- uaCCUCUCG---AGCUACU---------------GCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 164750 0.66 0.973296
Target:  5'- -aGGGGGGCaUCGcgGuCGcCGGGCGa -3'
miRNA:   3'- uaCCUCUCG-AGCuaCuGCuGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 150440 0.66 0.971693
Target:  5'- -aGGAGAGCgcgccCGggGuccuccuggucugggGCGGCGAGCGc -3'
miRNA:   3'- uaCCUCUCGa----GCuaC---------------UGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 197561 0.66 0.970587
Target:  5'- -aGGuaguGAcGCagGAUGGCGAUGAGgCGGa -3'
miRNA:   3'- uaCCu---CU-CGagCUACUGCUGCUC-GCC- -5'
13972 3' -55.2 NC_003521.1 + 98239 0.66 0.970587
Target:  5'- -cGGGGAGg-CGggGGCGGCcacGGCGGg -3'
miRNA:   3'- uaCCUCUCgaGCuaCUGCUGc--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 13676 0.66 0.970587
Target:  5'- -cGGAGAGggUGgcGGCGACGAcuuGCGa -3'
miRNA:   3'- uaCCUCUCgaGCuaCUGCUGCU---CGCc -5'
13972 3' -55.2 NC_003521.1 + 123158 0.66 0.970587
Target:  5'- gGUGGuGcugcuGCUgaGGUGGCGGCGgcGGCGGg -3'
miRNA:   3'- -UACCuCu----CGAg-CUACUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 39799 0.66 0.970587
Target:  5'- --uGAG-GCUCGGcggGGCGcCGGGCGGu -3'
miRNA:   3'- uacCUCuCGAGCUa--CUGCuGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 74773 0.66 0.970587
Target:  5'- cGUGGcuGGAGUaUGAcGACGGCGgcAGCGGu -3'
miRNA:   3'- -UACC--UCUCGaGCUaCUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 240026 0.66 0.970587
Target:  5'- --uGAG-GCUCGGcggGGCGcCGGGCGGu -3'
miRNA:   3'- uacCUCuCGAGCUa--CUGCuGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 104948 0.66 0.967687
Target:  5'- --aGAGAGCUUGGaggagcUGACGACGGaaGGg -3'
miRNA:   3'- uacCUCUCGAGCU------ACUGCUGCUcgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.