Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13972 | 3' | -55.2 | NC_003521.1 | + | 187901 | 0.71 | 0.799316 |
Target: 5'- gGUGGAcaaucgcGAG-UCGAUGACGACGuGCGu -3' miRNA: 3'- -UACCU-------CUCgAGCUACUGCUGCuCGCc -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 238527 | 0.71 | 0.841719 |
Target: 5'- gGUGcGAGAGCUCGu---CGGCcAGCGGg -3' miRNA: 3'- -UAC-CUCUCGAGCuacuGCUGcUCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 192348 | 0.71 | 0.825596 |
Target: 5'- gAUGG-GuGCUCGGUGcuCGcACGGGCGGc -3' miRNA: 3'- -UACCuCuCGAGCUACu-GC-UGCUCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 89917 | 0.71 | 0.800187 |
Target: 5'- cGUGGaAGGGCgcgcagUCGAUGACGccgGCGuGCGGc -3' miRNA: 3'- -UACC-UCUCG------AGCUACUGC---UGCuCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 162223 | 0.7 | 0.871758 |
Target: 5'- -cGGGGGGUgguagCGccGACGGCGcuGGCGGg -3' miRNA: 3'- uaCCUCUCGa----GCuaCUGCUGC--UCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 19041 | 0.7 | 0.878775 |
Target: 5'- -cGGAcgcugGAGCuUCGAgGACGGCGGcGCGGc -3' miRNA: 3'- uaCCU-----CUCG-AGCUaCUGCUGCU-CGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 166229 | 0.7 | 0.864539 |
Target: 5'- cUGGuagaAGAGCgUGAUGccgccCGGCGAGCGGg -3' miRNA: 3'- uACC----UCUCGaGCUACu----GCUGCUCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 207439 | 0.7 | 0.864539 |
Target: 5'- -gGGAGAGCggCGGcUGGCGGCGuGUGu -3' miRNA: 3'- uaCCUCUCGa-GCU-ACUGCUGCuCGCc -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 149703 | 0.7 | 0.867451 |
Target: 5'- gGUGGAGcccugugagcucucGCUCGGcgugcccGACGACGAGUGGc -3' miRNA: 3'- -UACCUCu-------------CGAGCUa------CUGCUGCUCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 110675 | 0.7 | 0.849514 |
Target: 5'- -gGGcguAGcGCUCGGUGGCGGC-AGCGGc -3' miRNA: 3'- uaCC---UCuCGAGCUACUGCUGcUCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 113851 | 0.7 | 0.857122 |
Target: 5'- -cGGGGcGGC-CGgcGACGACGGcGCGGg -3' miRNA: 3'- uaCCUC-UCGaGCuaCUGCUGCU-CGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 36802 | 0.7 | 0.878775 |
Target: 5'- -cGGAGccGCUCGcgGACGGCGGacuCGGg -3' miRNA: 3'- uaCCUCu-CGAGCuaCUGCUGCUc--GCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 99188 | 0.69 | 0.898564 |
Target: 5'- cUGG-GGGCUgaaGGUGGCGGCGgaggauacGGCGGg -3' miRNA: 3'- uACCuCUCGAg--CUACUGCUGC--------UCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 33084 | 0.69 | 0.898564 |
Target: 5'- gAUGGccuucugcacGGGCUccagccagcCGAUGACGGCGuAGCGGg -3' miRNA: 3'- -UACCu---------CUCGA---------GCUACUGCUGC-UCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 80271 | 0.69 | 0.898564 |
Target: 5'- -cGGAGcuuGGUUCGAaGACGACGGcGCGu -3' miRNA: 3'- uaCCUC---UCGAGCUaCUGCUGCU-CGCc -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 150553 | 0.69 | 0.892181 |
Target: 5'- gGUGGuGGuGCgggUGGUGGCGGCG-GCGGc -3' miRNA: 3'- -UACCuCU-CGa--GCUACUGCUGCuCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 204273 | 0.69 | 0.89919 |
Target: 5'- cUGGAGAcggcGCUCGAcaugaccggcaugccGACGACcGGCGGg -3' miRNA: 3'- uACCUCU----CGAGCUa--------------CUGCUGcUCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 38240 | 0.69 | 0.91067 |
Target: 5'- -aGGAGAGCauugacgcCGGUgaucucagcggaGACGACGuAGCGGa -3' miRNA: 3'- uaCCUCUCGa-------GCUA------------CUGCUGC-UCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 181881 | 0.69 | 0.91639 |
Target: 5'- -cGGcGAGCUCGccGAUGACGuucGUGGu -3' miRNA: 3'- uaCCuCUCGAGCuaCUGCUGCu--CGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 213182 | 0.69 | 0.898564 |
Target: 5'- -aGGuuGGGGCUCag-GACGAUGAGCGu -3' miRNA: 3'- uaCC--UCUCGAGcuaCUGCUGCUCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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