miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13976 3' -55.9 NC_003521.1 + 116876 0.66 0.93538
Target:  5'- --cGCGcAGUgg-CGCGGCUGCggcgGCGCg -3'
miRNA:   3'- acaUGC-UCGagaGCGUCGACGa---CGUG- -5'
13976 3' -55.9 NC_003521.1 + 184663 0.66 0.93538
Target:  5'- -cUGCGuGUUCgcgCGCAGCgaGCaGCACg -3'
miRNA:   3'- acAUGCuCGAGa--GCGUCGa-CGaCGUG- -5'
13976 3' -55.9 NC_003521.1 + 98815 0.66 0.93538
Target:  5'- cGU-CGAgGCg-UUGCAGCUGCUugGCGCg -3'
miRNA:   3'- aCAuGCU-CGagAGCGUCGACGA--CGUG- -5'
13976 3' -55.9 NC_003521.1 + 225475 0.66 0.953027
Target:  5'- aGUACGucacCagUCGCGaCUGCUGCACc -3'
miRNA:   3'- aCAUGCuc--GagAGCGUcGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 185273 0.66 0.933907
Target:  5'- --cGCGAGUgcuacuuccccucgUCggCGCGGCgcucGCUGCGCg -3'
miRNA:   3'- acaUGCUCG--------------AGa-GCGUCGa---CGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 153639 0.66 0.953027
Target:  5'- --aGCGGGUgcgUCUCGguGgaGCgcUGCACg -3'
miRNA:   3'- acaUGCUCG---AGAGCguCgaCG--ACGUG- -5'
13976 3' -55.9 NC_003521.1 + 112124 0.66 0.930389
Target:  5'- gGUGCGcaAGCgguaUCUgCGCgAGgaGCUGCGCg -3'
miRNA:   3'- aCAUGC--UCG----AGA-GCG-UCgaCGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 88409 0.66 0.93538
Target:  5'- aGgcCGcGCUCUUGCacgaaGGC-GCUGCGCg -3'
miRNA:   3'- aCauGCuCGAGAGCG-----UCGaCGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 110018 0.66 0.93538
Target:  5'- aUGUGCacccGGCUCUCGUGGgCgcGCUGCGg -3'
miRNA:   3'- -ACAUGc---UCGAGAGCGUC-Ga-CGACGUg -5'
13976 3' -55.9 NC_003521.1 + 173695 0.66 0.953027
Target:  5'- cUGUGCGGcccgcuGCUgUUGCuGCUGCUGgGa -3'
miRNA:   3'- -ACAUGCU------CGAgAGCGuCGACGACgUg -5'
13976 3' -55.9 NC_003521.1 + 53436 0.66 0.930389
Target:  5'- gGUGCGgaGGCUgUUGCcGCUGCU-CACc -3'
miRNA:   3'- aCAUGC--UCGAgAGCGuCGACGAcGUG- -5'
13976 3' -55.9 NC_003521.1 + 54869 0.66 0.953027
Target:  5'- --cACGAGCuguugaaagugaUCUggacaCGCAGUgGCUGCGCa -3'
miRNA:   3'- acaUGCUCG------------AGA-----GCGUCGaCGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 44312 0.66 0.948959
Target:  5'- cGUACGGGgUgCUgaaGCAGgUGCUGgGCa -3'
miRNA:   3'- aCAUGCUCgA-GAg--CGUCgACGACgUG- -5'
13976 3' -55.9 NC_003521.1 + 88512 0.66 0.940138
Target:  5'- --cGCGcAGCgaCUCGCAGCcgUGCagGCGCa -3'
miRNA:   3'- acaUGC-UCGa-GAGCGUCG--ACGa-CGUG- -5'
13976 3' -55.9 NC_003521.1 + 84981 0.66 0.940138
Target:  5'- --aGCGAGCUCUgCGUacGGUU-CUGCGCc -3'
miRNA:   3'- acaUGCUCGAGA-GCG--UCGAcGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 150272 0.66 0.948959
Target:  5'- cGgcCGGcCUCUCGUGGgUGCUGuCGCg -3'
miRNA:   3'- aCauGCUcGAGAGCGUCgACGAC-GUG- -5'
13976 3' -55.9 NC_003521.1 + 73392 0.66 0.948959
Target:  5'- aUGUcCGAGUUCaUC-CAcCUGCUGCGCc -3'
miRNA:   3'- -ACAuGCUCGAG-AGcGUcGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 221155 0.66 0.940138
Target:  5'- aGUugG-GCUCggcccagCGCAGCaGCcccagGCACa -3'
miRNA:   3'- aCAugCuCGAGa------GCGUCGaCGa----CGUG- -5'
13976 3' -55.9 NC_003521.1 + 394 0.66 0.944663
Target:  5'- gUGUGCuGGCg--CGCGGCUGUgacUGCAg -3'
miRNA:   3'- -ACAUGcUCGagaGCGUCGACG---ACGUg -5'
13976 3' -55.9 NC_003521.1 + 162573 0.66 0.944663
Target:  5'- --gACGGGCUUcagCGCucugccGGCUGCggugGCACu -3'
miRNA:   3'- acaUGCUCGAGa--GCG------UCGACGa---CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.