miRNA display CGI


Results 1 - 20 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13976 3' -55.9 NC_003521.1 + 207540 1.1 0.003042
Target:  5'- aUGUACGAGCUCUCGCAGCUGCUGCACg -3'
miRNA:   3'- -ACAUGCUCGAGAGCGUCGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 202533 0.89 0.075517
Target:  5'- --gACGAGCUCUCGCAcCUGCUGCGCg -3'
miRNA:   3'- acaUGCUCGAGAGCGUcGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 2305 0.89 0.075517
Target:  5'- --gACGAGCUCUCGCAcCUGCUGCGCg -3'
miRNA:   3'- acaUGCUCGAGAGCGUcGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 86755 0.86 0.124091
Target:  5'- --gAUGAGCUUUCuGCGGCUGCUGCACg -3'
miRNA:   3'- acaUGCUCGAGAG-CGUCGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 137300 0.81 0.249067
Target:  5'- -cUGCGGGUgg-CGCGGCUGCUGCGCg -3'
miRNA:   3'- acAUGCUCGagaGCGUCGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 15918 0.77 0.417023
Target:  5'- -cUACGAGCcCUCGCAggagauucuGCUGCUGUGCg -3'
miRNA:   3'- acAUGCUCGaGAGCGU---------CGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 47638 0.77 0.42574
Target:  5'- cGUgACGgcGGCUCUgGCGGCaGCUGCGCa -3'
miRNA:   3'- aCA-UGC--UCGAGAgCGUCGaCGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 29401 0.76 0.476463
Target:  5'- cUGUG-GAGCUCguuucacgaugugCGcCGGCUGCUGCACg -3'
miRNA:   3'- -ACAUgCUCGAGa------------GC-GUCGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 85235 0.76 0.480202
Target:  5'- cUGcUGCu-GCUCUCGUuGCUGCUGCACc -3'
miRNA:   3'- -AC-AUGcuCGAGAGCGuCGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 103432 0.75 0.517364
Target:  5'- cGUGCguGAGCUCcgccaggUCGCGGCgGUUGCGCg -3'
miRNA:   3'- aCAUG--CUCGAG-------AGCGUCGaCGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 56147 0.74 0.547699
Target:  5'- aGUGCG-GCUCgUGCuGCUcGCUGCGCg -3'
miRNA:   3'- aCAUGCuCGAGaGCGuCGA-CGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 163642 0.74 0.557608
Target:  5'- cGUGCGGGC-CUCGguGCgcgucucggUGCUGCGg -3'
miRNA:   3'- aCAUGCUCGaGAGCguCG---------ACGACGUg -5'
13976 3' -55.9 NC_003521.1 + 174637 0.73 0.601721
Target:  5'- cUGUGCGGuucGCUCU-GCAGCguuucguacaucuguUGCUGCGCg -3'
miRNA:   3'- -ACAUGCU---CGAGAgCGUCG---------------ACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 172257 0.73 0.638154
Target:  5'- --cACGcuGCUCUCcgGCAGCUGCUGCu- -3'
miRNA:   3'- acaUGCu-CGAGAG--CGUCGACGACGug -5'
13976 3' -55.9 NC_003521.1 + 150616 0.73 0.638154
Target:  5'- ---gUGGGCUgUUgcgGCGGCUGCUGCGCa -3'
miRNA:   3'- acauGCUCGAgAG---CGUCGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 68134 0.72 0.668483
Target:  5'- cGUACGAGCagugcugguaUCaggCGCAGgUGCUGCGu -3'
miRNA:   3'- aCAUGCUCG----------AGa--GCGUCgACGACGUg -5'
13976 3' -55.9 NC_003521.1 + 144279 0.72 0.678545
Target:  5'- cUGgGCGAGCacggcgaCUCGCuGCUGCcGCACg -3'
miRNA:   3'- -ACaUGCUCGa------GAGCGuCGACGaCGUG- -5'
13976 3' -55.9 NC_003521.1 + 48008 0.72 0.69855
Target:  5'- ---cCGGGCUUcUGCGGCUGCUGCcaGCg -3'
miRNA:   3'- acauGCUCGAGaGCGUCGACGACG--UG- -5'
13976 3' -55.9 NC_003521.1 + 222256 0.71 0.708475
Target:  5'- --aGCGcGCUCUC-CAGCUGC-GCGCg -3'
miRNA:   3'- acaUGCuCGAGAGcGUCGACGaCGUG- -5'
13976 3' -55.9 NC_003521.1 + 64890 0.71 0.708475
Target:  5'- cUGUACGAGCgCUacaaaCGCgAGCUggagcaGCUGCACg -3'
miRNA:   3'- -ACAUGCUCGaGA-----GCG-UCGA------CGACGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.