miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13976 3' -55.9 NC_003521.1 + 394 0.66 0.944663
Target:  5'- gUGUGCuGGCg--CGCGGCUGUgacUGCAg -3'
miRNA:   3'- -ACAUGcUCGagaGCGUCGACG---ACGUg -5'
13976 3' -55.9 NC_003521.1 + 2305 0.89 0.075517
Target:  5'- --gACGAGCUCUCGCAcCUGCUGCGCg -3'
miRNA:   3'- acaUGCUCGAGAGCGUcGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 2719 0.67 0.894896
Target:  5'- cGUGCGGgagcgccgucaccGC-CUCGCuggcuGGCUGCUGCuACu -3'
miRNA:   3'- aCAUGCU-------------CGaGAGCG-----UCGACGACG-UG- -5'
13976 3' -55.9 NC_003521.1 + 7015 0.67 0.895547
Target:  5'- cGUACuuGggCUgGC-GCUGCUGCACg -3'
miRNA:   3'- aCAUGcuCgaGAgCGuCGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 15058 0.66 0.948959
Target:  5'- --cGCGAGCgcgaGCGGCgcgUGCUGCAa -3'
miRNA:   3'- acaUGCUCGagagCGUCG---ACGACGUg -5'
13976 3' -55.9 NC_003521.1 + 15918 0.77 0.417023
Target:  5'- -cUACGAGCcCUCGCAggagauucuGCUGCUGUGCg -3'
miRNA:   3'- acAUGCUCGaGAGCGU---------CGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 17585 0.66 0.948959
Target:  5'- --aGCGcacGCUCUCGCuGCUGCagGgGCu -3'
miRNA:   3'- acaUGCu--CGAGAGCGuCGACGa-CgUG- -5'
13976 3' -55.9 NC_003521.1 + 21277 0.69 0.836736
Target:  5'- cGUAUcugGAGCgcuUCGCGGUcugGCUGCGCg -3'
miRNA:   3'- aCAUG---CUCGag-AGCGUCGa--CGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 22398 0.67 0.901931
Target:  5'- gGUGCcgccGCUgUCGCuGGCcaUGCUGCGCg -3'
miRNA:   3'- aCAUGcu--CGAgAGCG-UCG--ACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 27095 0.67 0.919705
Target:  5'- aGUGCaGGCUCUCGaCGGCgcgcagGCcgGUGCg -3'
miRNA:   3'- aCAUGcUCGAGAGC-GUCGa-----CGa-CGUG- -5'
13976 3' -55.9 NC_003521.1 + 29259 0.67 0.908087
Target:  5'- --cGCGAGCg--UGCGGCgcuacugGCUGUACg -3'
miRNA:   3'- acaUGCUCGagaGCGUCGa------CGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 29401 0.76 0.476463
Target:  5'- cUGUG-GAGCUCguuucacgaugugCGcCGGCUGCUGCACg -3'
miRNA:   3'- -ACAUgCUCGAGa------------GC-GUCGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 40036 0.7 0.775675
Target:  5'- cGUGCGcAGCUcCUUGacCAGCUGuUUGCACa -3'
miRNA:   3'- aCAUGC-UCGA-GAGC--GUCGAC-GACGUG- -5'
13976 3' -55.9 NC_003521.1 + 40716 0.66 0.944663
Target:  5'- gUGUGCuGGCg--CGCGGCUGUgacUGCAg -3'
miRNA:   3'- -ACAUGcUCGagaGCGUCGACG---ACGUg -5'
13976 3' -55.9 NC_003521.1 + 44312 0.66 0.948959
Target:  5'- cGUACGGGgUgCUgaaGCAGgUGCUGgGCa -3'
miRNA:   3'- aCAUGCUCgA-GAg--CGUCgACGACgUG- -5'
13976 3' -55.9 NC_003521.1 + 45180 0.67 0.919146
Target:  5'- gGUGCGAcucccugGC-CUCGgAGCUGCaGCAa -3'
miRNA:   3'- aCAUGCU-------CGaGAGCgUCGACGaCGUg -5'
13976 3' -55.9 NC_003521.1 + 47638 0.77 0.42574
Target:  5'- cGUgACGgcGGCUCUgGCGGCaGCUGCGCa -3'
miRNA:   3'- aCA-UGC--UCGAGAgCGUCGaCGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 48008 0.72 0.69855
Target:  5'- ---cCGGGCUUcUGCGGCUGCUGCcaGCg -3'
miRNA:   3'- acauGCUCGAGaGCGUCGACGACG--UG- -5'
13976 3' -55.9 NC_003521.1 + 49151 0.69 0.811507
Target:  5'- -uUGCGA-UUgUCGCGGCUGCUGCu- -3'
miRNA:   3'- acAUGCUcGAgAGCGUCGACGACGug -5'
13976 3' -55.9 NC_003521.1 + 53436 0.66 0.930389
Target:  5'- gGUGCGgaGGCUgUUGCcGCUGCU-CACc -3'
miRNA:   3'- aCAUGC--UCGAgAGCGuCGACGAcGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.