miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13976 3' -55.9 NC_003521.1 + 80344 0.69 0.852658
Target:  5'- aUGUAggggaaGAGCUgCUCcaGCGGCUGCaUGUACa -3'
miRNA:   3'- -ACAUg-----CUCGA-GAG--CGUCGACG-ACGUG- -5'
13976 3' -55.9 NC_003521.1 + 40036 0.7 0.775675
Target:  5'- cGUGCGcAGCUcCUUGacCAGCUGuUUGCACa -3'
miRNA:   3'- aCAUGC-UCGA-GAGC--GUCGAC-GACGUG- -5'
13976 3' -55.9 NC_003521.1 + 74490 0.7 0.784843
Target:  5'- uUGUGCGcGaCUUcgCGCAGCUGCUGgaGCa -3'
miRNA:   3'- -ACAUGCuC-GAGa-GCGUCGACGACg-UG- -5'
13976 3' -55.9 NC_003521.1 + 145133 0.7 0.793876
Target:  5'- gGUG-GAGCUCUUuCAGCUGCUGgAg -3'
miRNA:   3'- aCAUgCUCGAGAGcGUCGACGACgUg -5'
13976 3' -55.9 NC_003521.1 + 144089 0.7 0.802767
Target:  5'- cGUGCuGGGCUucugcCUCauGCGGCUGCUGgACc -3'
miRNA:   3'- aCAUG-CUCGA-----GAG--CGUCGACGACgUG- -5'
13976 3' -55.9 NC_003521.1 + 49151 0.69 0.811507
Target:  5'- -uUGCGA-UUgUCGCGGCUGCUGCu- -3'
miRNA:   3'- acAUGCUcGAgAGCGUCGACGACGug -5'
13976 3' -55.9 NC_003521.1 + 156609 0.69 0.820086
Target:  5'- --cGCGGcCUCUCGCGccuGgUGCUGCGCg -3'
miRNA:   3'- acaUGCUcGAGAGCGU---CgACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 223833 0.69 0.844792
Target:  5'- --cGCGGGCgccugCUgucccUGCGGCUGCUGCuGCg -3'
miRNA:   3'- acaUGCUCGa----GA-----GCGUCGACGACG-UG- -5'
13976 3' -55.9 NC_003521.1 + 136052 0.69 0.852658
Target:  5'- cUGUGCGAcCUgg-GCAGCgGCUGCGCg -3'
miRNA:   3'- -ACAUGCUcGAgagCGUCGaCGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 114940 0.7 0.766381
Target:  5'- cUGga-GAGCUgCUCGCgcagcggcGGCUGCUGCGg -3'
miRNA:   3'- -ACaugCUCGA-GAGCG--------UCGACGACGUg -5'
13976 3' -55.9 NC_003521.1 + 131980 0.71 0.737834
Target:  5'- --cGCGuGUUCaCGCAGCUggaGCUGCGCa -3'
miRNA:   3'- acaUGCuCGAGaGCGUCGA---CGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 187806 0.71 0.737834
Target:  5'- gGUACG-GCUgCacgaagUCGUGGCUGUUGCGCa -3'
miRNA:   3'- aCAUGCuCGA-G------AGCGUCGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 137300 0.81 0.249067
Target:  5'- -cUGCGGGUgg-CGCGGCUGCUGCGCg -3'
miRNA:   3'- acAUGCUCGagaGCGUCGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 103432 0.75 0.517364
Target:  5'- cGUGCguGAGCUCcgccaggUCGCGGCgGUUGCGCg -3'
miRNA:   3'- aCAUG--CUCGAG-------AGCGUCGaCGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 56147 0.74 0.547699
Target:  5'- aGUGCG-GCUCgUGCuGCUcGCUGCGCg -3'
miRNA:   3'- aCAUGCuCGAGaGCGuCGA-CGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 150616 0.73 0.638154
Target:  5'- ---gUGGGCUgUUgcgGCGGCUGCUGCGCa -3'
miRNA:   3'- acauGCUCGAgAG---CGUCGACGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 68134 0.72 0.668483
Target:  5'- cGUACGAGCagugcugguaUCaggCGCAGgUGCUGCGu -3'
miRNA:   3'- aCAUGCUCG----------AGa--GCGUCgACGACGUg -5'
13976 3' -55.9 NC_003521.1 + 144279 0.72 0.678545
Target:  5'- cUGgGCGAGCacggcgaCUCGCuGCUGCcGCACg -3'
miRNA:   3'- -ACaUGCUCGa------GAGCGuCGACGaCGUG- -5'
13976 3' -55.9 NC_003521.1 + 64890 0.71 0.708475
Target:  5'- cUGUACGAGCgCUacaaaCGCgAGCUggagcaGCUGCACg -3'
miRNA:   3'- -ACAUGCUCGaGA-----GCG-UCGA------CGACGUG- -5'
13976 3' -55.9 NC_003521.1 + 222256 0.71 0.708475
Target:  5'- --aGCGcGCUCUC-CAGCUGC-GCGCg -3'
miRNA:   3'- acaUGCuCGAGAGcGUCGACGaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.