miRNA display CGI


Results 1 - 20 of 531 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13977 5' -60.5 NC_003521.1 + 178637 0.65 0.873817
Target:  5'- gGGCGAUAgGGGgGaggagggugacaGUCccagcaggUGCGCCGCg -3'
miRNA:   3'- -CCGCUGUgCCCgCgg----------CAG--------AUGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 16851 0.66 0.833298
Target:  5'- cGcCGGCGCaGGCGgaCGUCUACGacgugcguuccCCGCg -3'
miRNA:   3'- cC-GCUGUGcCCGCg-GCAGAUGC-----------GGCG- -5'
13977 5' -60.5 NC_003521.1 + 30644 0.66 0.848386
Target:  5'- cGGCGGCGCGccUGCuCGUCaugGCGCCu- -3'
miRNA:   3'- -CCGCUGUGCccGCG-GCAGa--UGCGGcg -5'
13977 5' -60.5 NC_003521.1 + 36827 0.66 0.848386
Target:  5'- cGCGcCACGGGCcggcGCUG-CUGUGCCGg -3'
miRNA:   3'- cCGCuGUGCCCG----CGGCaGAUGCGGCg -5'
13977 5' -60.5 NC_003521.1 + 84654 0.66 0.832526
Target:  5'- cGGCGagaugccGCACaGGCGUCGcagCaGCGCCaGCa -3'
miRNA:   3'- -CCGC-------UGUGcCCGCGGCa--GaUGCGG-CG- -5'
13977 5' -60.5 NC_003521.1 + 3643 0.66 0.854958
Target:  5'- aGCGugcCACGGccgcCGCCGUCUGCcucggcgGCCGg -3'
miRNA:   3'- cCGCu--GUGCCc---GCGGCAGAUG-------CGGCg -5'
13977 5' -60.5 NC_003521.1 + 238459 0.66 0.848386
Target:  5'- gGGCGGCcucgGCGGGCGgggCGgagACGCgGCc -3'
miRNA:   3'- -CCGCUG----UGCCCGCg--GCagaUGCGgCG- -5'
13977 5' -60.5 NC_003521.1 + 100607 0.66 0.831753
Target:  5'- aGGCGGCGaagcgucucuuggcCGGGggaccucgaaaaccgGCCGUCc-CGCCGCg -3'
miRNA:   3'- -CCGCUGU--------------GCCCg--------------CGGCAGauGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 207044 0.66 0.848386
Target:  5'- cGGUGGC-UGGGCcgcagGCCGgagGCGuuGCa -3'
miRNA:   3'- -CCGCUGuGCCCG-----CGGCagaUGCggCG- -5'
13977 5' -60.5 NC_003521.1 + 168261 0.66 0.847647
Target:  5'- uGCcGCACGaGGCGCUGaucuggaUCUGCacgGCCGUa -3'
miRNA:   3'- cCGcUGUGC-CCGCGGC-------AGAUG---CGGCG- -5'
13977 5' -60.5 NC_003521.1 + 70657 0.66 0.838653
Target:  5'- uGCGGCugGuGCugcagcugcuGCuggaaaaccgacggCGUCUGCGCCGCa -3'
miRNA:   3'- cCGCUGugCcCG----------CG--------------GCAGAUGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 157603 0.66 0.848386
Target:  5'- uGCG-UGCGGGagGCCGU--ACGCUGCu -3'
miRNA:   3'- cCGCuGUGCCCg-CGGCAgaUGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 36009 0.66 0.832526
Target:  5'- cGGCGACggaggugGCGGccccaCGaCCGUCUugGCCc- -3'
miRNA:   3'- -CCGCUG-------UGCCc----GC-GGCAGAugCGGcg -5'
13977 5' -60.5 NC_003521.1 + 239217 0.66 0.833298
Target:  5'- cGCaGCACaGGCGCUGguggaugugGCGCUGCa -3'
miRNA:   3'- cCGcUGUGcCCGCGGCaga------UGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 93011 0.66 0.840923
Target:  5'- aGGCaGGCAUGGcGUcuaGCCGcCguaGCCGCa -3'
miRNA:   3'- -CCG-CUGUGCC-CG---CGGCaGaugCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 130105 0.66 0.843928
Target:  5'- aGCuGC-CGGGCcucuucugccccugcGUCGUCggcgGCGCCGCc -3'
miRNA:   3'- cCGcUGuGCCCG---------------CGGCAGa---UGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 109608 0.66 0.843928
Target:  5'- aGCGAgCACaGGC-CCGUCUcgaugaugaagaugaGcCGCCGCu -3'
miRNA:   3'- cCGCU-GUGcCCGcGGCAGA---------------U-GCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 27992 0.66 0.832526
Target:  5'- cGGCGGCagcgugaGCGGcaccuCGCUGUCcuccuccagcACGCCGCg -3'
miRNA:   3'- -CCGCUG-------UGCCc----GCGGCAGa---------UGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 54531 0.66 0.833298
Target:  5'- cGGCGccGCugGGGC-CCGgcggCUuuuugACGuuGCg -3'
miRNA:   3'- -CCGC--UGugCCCGcGGCa---GA-----UGCggCG- -5'
13977 5' -60.5 NC_003521.1 + 28317 0.66 0.85568
Target:  5'- aGCGACcCcGGCGCgGcCUGCGgaCCGCc -3'
miRNA:   3'- cCGCUGuGcCCGCGgCaGAUGC--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.